miRNA display CGI


Results 21 - 40 of 307 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11068 3' -63.3 NC_002794.1 + 151779 0.75 0.221116
Target:  5'- gACCGcGCCGCuGCACGCCaGACGcCGGg -3'
miRNA:   3'- gUGGC-CGGCGcCGUGCGGcCUGU-GUC- -5'
11068 3' -63.3 NC_002794.1 + 154370 0.75 0.221116
Target:  5'- -uCCaGGCCGCGGCgGCGgCGGGCACGc -3'
miRNA:   3'- guGG-CCGGCGCCG-UGCgGCCUGUGUc -5'
11068 3' -63.3 NC_002794.1 + 82688 0.75 0.226224
Target:  5'- aCGCCGuucGCC-CGGCGCGCCGaGACGCGc -3'
miRNA:   3'- -GUGGC---CGGcGCCGUGCGGC-CUGUGUc -5'
11068 3' -63.3 NC_002794.1 + 185171 0.75 0.231431
Target:  5'- cCGCCGG-CGCGGCGCGgUCGG-CGCGGu -3'
miRNA:   3'- -GUGGCCgGCGCCGUGC-GGCCuGUGUC- -5'
11068 3' -63.3 NC_002794.1 + 53767 0.75 0.231431
Target:  5'- uGCCGGCgGCGGgACGCCcGcGACGCGc -3'
miRNA:   3'- gUGGCCGgCGCCgUGCGG-C-CUGUGUc -5'
11068 3' -63.3 NC_002794.1 + 179205 0.75 0.231431
Target:  5'- -cCCGGCCgGCGGCACGaCGGACGuggccCAGa -3'
miRNA:   3'- guGGCCGG-CGCCGUGCgGCCUGU-----GUC- -5'
11068 3' -63.3 NC_002794.1 + 191010 0.75 0.231431
Target:  5'- gAUCGGCCGUucgaucGGCACguucaGCCGGACGCAc -3'
miRNA:   3'- gUGGCCGGCG------CCGUG-----CGGCCUGUGUc -5'
11068 3' -63.3 NC_002794.1 + 102641 0.75 0.231431
Target:  5'- cCGCCGGCUgGCGGCGCGCuCGGAgGa-- -3'
miRNA:   3'- -GUGGCCGG-CGCCGUGCG-GCCUgUguc -5'
11068 3' -63.3 NC_002794.1 + 118279 0.74 0.23674
Target:  5'- gCGCCGGCguCGgGGacCGCGCCGGGCGCGu -3'
miRNA:   3'- -GUGGCCG--GCgCC--GUGCGGCCUGUGUc -5'
11068 3' -63.3 NC_002794.1 + 80389 0.74 0.241059
Target:  5'- cCGCCGcgacuaccuacucGCCGCGGCccaggugGCGCCGGGCGgGGc -3'
miRNA:   3'- -GUGGC-------------CGGCGCCG-------UGCGGCCUGUgUC- -5'
11068 3' -63.3 NC_002794.1 + 145316 0.74 0.247662
Target:  5'- aACCGGCgCGCGGCgggcgGCGCuCGGGCccgaGCGGg -3'
miRNA:   3'- gUGGCCG-GCGCCG-----UGCG-GCCUG----UGUC- -5'
11068 3' -63.3 NC_002794.1 + 55298 0.74 0.247662
Target:  5'- gGgCGGCgGCGGCgucGCGgCGGGCGCGGg -3'
miRNA:   3'- gUgGCCGgCGCCG---UGCgGCCUGUGUC- -5'
11068 3' -63.3 NC_002794.1 + 82951 0.74 0.253278
Target:  5'- gGCCcGCCGCgcacGGCGCGCaCGcGACGCAGg -3'
miRNA:   3'- gUGGcCGGCG----CCGUGCG-GC-CUGUGUC- -5'
11068 3' -63.3 NC_002794.1 + 107201 0.74 0.253278
Target:  5'- cCGCCGGCCucgccCGGCGcCGCCGGGCGg-- -3'
miRNA:   3'- -GUGGCCGGc----GCCGU-GCGGCCUGUguc -5'
11068 3' -63.3 NC_002794.1 + 106975 0.74 0.258998
Target:  5'- uCGCgCGGCgGcCGGCACGgCGGugGCGGc -3'
miRNA:   3'- -GUG-GCCGgC-GCCGUGCgGCCugUGUC- -5'
11068 3' -63.3 NC_002794.1 + 101579 0.74 0.258998
Target:  5'- uGCCGGCCGCcgcggccgggggGGCGggugccggccCGCCGGGCGgGGg -3'
miRNA:   3'- gUGGCCGGCG------------CCGU----------GCGGCCUGUgUC- -5'
11068 3' -63.3 NC_002794.1 + 30742 0.74 0.264824
Target:  5'- aACUGGCCGCGGCuggcGCGCUGGAgGa-- -3'
miRNA:   3'- gUGGCCGGCGCCG----UGCGGCCUgUguc -5'
11068 3' -63.3 NC_002794.1 + 122685 0.73 0.270755
Target:  5'- uGCCGGUCGCGccaGCGCCGGGCgACGu -3'
miRNA:   3'- gUGGCCGGCGCcg-UGCGGCCUG-UGUc -5'
11068 3' -63.3 NC_002794.1 + 95020 0.73 0.282936
Target:  5'- gGgCGGCUguGCGGCAucuCGCCGGugGCGGc -3'
miRNA:   3'- gUgGCCGG--CGCCGU---GCGGCCugUGUC- -5'
11068 3' -63.3 NC_002794.1 + 184020 0.73 0.282936
Target:  5'- uCGCCGGCCGCcacGGCaccgcgcgcaGCGCgCGGuCGCGGg -3'
miRNA:   3'- -GUGGCCGGCG---CCG----------UGCG-GCCuGUGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.