miRNA display CGI


Results 41 - 60 of 307 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11068 3' -63.3 NC_002794.1 + 98354 0.73 0.282936
Target:  5'- gACCGGCCgaucgccgcGCGGCugGCgGGAgACGu -3'
miRNA:   3'- gUGGCCGG---------CGCCGugCGgCCUgUGUc -5'
11068 3' -63.3 NC_002794.1 + 95020 0.73 0.282936
Target:  5'- gGgCGGCUguGCGGCAucuCGCCGGugGCGGc -3'
miRNA:   3'- gUgGCCGG--CGCCGU---GCGGCCugUGUC- -5'
11068 3' -63.3 NC_002794.1 + 141449 0.73 0.289189
Target:  5'- gCGCCGGgaGCGGCGCGgcguCCGGACugGc -3'
miRNA:   3'- -GUGGCCggCGCCGUGC----GGCCUGugUc -5'
11068 3' -63.3 NC_002794.1 + 181166 0.73 0.289189
Target:  5'- cCGCCGcGCCGaCGGCgaACGgCGGACACu- -3'
miRNA:   3'- -GUGGC-CGGC-GCCG--UGCgGCCUGUGuc -5'
11068 3' -63.3 NC_002794.1 + 191871 0.73 0.295548
Target:  5'- gGCCGGCgGCGGaggggGCGgCGGAgGCGGg -3'
miRNA:   3'- gUGGCCGgCGCCg----UGCgGCCUgUGUC- -5'
11068 3' -63.3 NC_002794.1 + 94143 0.73 0.295548
Target:  5'- -uCCGaCCGCGGCgGCGCUGGACGguGg -3'
miRNA:   3'- guGGCcGGCGCCG-UGCGGCCUGUguC- -5'
11068 3' -63.3 NC_002794.1 + 193063 0.73 0.295548
Target:  5'- gCACCGGCUGCgGGCcguCGCgGGACagccGCAGc -3'
miRNA:   3'- -GUGGCCGGCG-CCGu--GCGgCCUG----UGUC- -5'
11068 3' -63.3 NC_002794.1 + 66735 0.73 0.300065
Target:  5'- cCGCCGGCgGUGGCGgcggcgcguacgacCGCUGGAC-CAGc -3'
miRNA:   3'- -GUGGCCGgCGCCGU--------------GCGGCCUGuGUC- -5'
11068 3' -63.3 NC_002794.1 + 48560 0.73 0.302016
Target:  5'- cCGCCGGCCGCccguccagaugGGCGaGCCGGAggaGCGGc -3'
miRNA:   3'- -GUGGCCGGCG-----------CCGUgCGGCCUg--UGUC- -5'
11068 3' -63.3 NC_002794.1 + 49410 0.73 0.302016
Target:  5'- aCGgCGGCCGCGGCgGCGgCGGccguCACGGc -3'
miRNA:   3'- -GUgGCCGGCGCCG-UGCgGCCu---GUGUC- -5'
11068 3' -63.3 NC_002794.1 + 146994 0.72 0.307931
Target:  5'- cCGCCGGCCgacgucggcggcgGCGGC-CGCCGG-CGCu- -3'
miRNA:   3'- -GUGGCCGG-------------CGCCGuGCGGCCuGUGuc -5'
11068 3' -63.3 NC_002794.1 + 180681 0.72 0.308593
Target:  5'- uCGCCGGCCGCucccGGCGC-CCGGcGgGCGGa -3'
miRNA:   3'- -GUGGCCGGCG----CCGUGcGGCC-UgUGUC- -5'
11068 3' -63.3 NC_002794.1 + 100453 0.72 0.308593
Target:  5'- gAgCGGCgGCGGCGCcuucCCGGugGCGGa -3'
miRNA:   3'- gUgGCCGgCGCCGUGc---GGCCugUGUC- -5'
11068 3' -63.3 NC_002794.1 + 123519 0.72 0.308593
Target:  5'- uGCCGGCCuGCaGCugGuUCGGGCACAc -3'
miRNA:   3'- gUGGCCGG-CGcCGugC-GGCCUGUGUc -5'
11068 3' -63.3 NC_002794.1 + 19528 0.72 0.308593
Target:  5'- gCGCCGGCgcggCGCGGCcCGCCGGuguCGGa -3'
miRNA:   3'- -GUGGCCG----GCGCCGuGCGGCCuguGUC- -5'
11068 3' -63.3 NC_002794.1 + 184580 0.72 0.315279
Target:  5'- gCGgCGGCgGCGGcCACGCgCGGcCGCGGg -3'
miRNA:   3'- -GUgGCCGgCGCC-GUGCG-GCCuGUGUC- -5'
11068 3' -63.3 NC_002794.1 + 143713 0.72 0.324821
Target:  5'- cCGCgGGCCcCGGCGggcgucguccucgccCGCCGGACGCGc -3'
miRNA:   3'- -GUGgCCGGcGCCGU---------------GCGGCCUGUGUc -5'
11068 3' -63.3 NC_002794.1 + 119524 0.72 0.324821
Target:  5'- aGCCGGCCgcggaccccucguccGCGGCcguCGCCGGcCACGu -3'
miRNA:   3'- gUGGCCGG---------------CGCCGu--GCGGCCuGUGUc -5'
11068 3' -63.3 NC_002794.1 + 188248 0.72 0.328281
Target:  5'- gACCGGCgGCGGCggcgguaGCGgCGGGC-CGGg -3'
miRNA:   3'- gUGGCCGgCGCCG-------UGCgGCCUGuGUC- -5'
11068 3' -63.3 NC_002794.1 + 38424 0.72 0.328976
Target:  5'- uCGCCGaCUccaugGCGGCGgGCCGGACugAGg -3'
miRNA:   3'- -GUGGCcGG-----CGCCGUgCGGCCUGugUC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.