miRNA display CGI


Results 21 - 40 of 307 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11068 3' -63.3 NC_002794.1 + 63486 0.66 0.666889
Target:  5'- cCGCCGucgacgacGCCGCGGCGuCGUCGucCGCGa -3'
miRNA:   3'- -GUGGC--------CGGCGCCGU-GCGGCcuGUGUc -5'
11068 3' -63.3 NC_002794.1 + 147573 0.66 0.666889
Target:  5'- gGCCaaGGCCgaGCGGCACaCCGaGGCGCu- -3'
miRNA:   3'- gUGG--CCGG--CGCCGUGcGGC-CUGUGuc -5'
11068 3' -63.3 NC_002794.1 + 107890 0.66 0.666889
Target:  5'- gCGgCGGgUGCGGC-UGCCGGGuCugAGg -3'
miRNA:   3'- -GUgGCCgGCGCCGuGCGGCCU-GugUC- -5'
11068 3' -63.3 NC_002794.1 + 100054 0.66 0.666889
Target:  5'- gUACCGGCUcaGCGaCACGCUGGAgCugGc -3'
miRNA:   3'- -GUGGCCGG--CGCcGUGCGGCCU-GugUc -5'
11068 3' -63.3 NC_002794.1 + 193422 0.66 0.666889
Target:  5'- cCGCCGcccgucguccaGCCGUccGGCACGCCGcccACGCAc -3'
miRNA:   3'- -GUGGC-----------CGGCG--CCGUGCGGCc--UGUGUc -5'
11068 3' -63.3 NC_002794.1 + 79343 0.66 0.665937
Target:  5'- cCGCCcGaUCGCGGCGCagagccuGUCGGACACGc -3'
miRNA:   3'- -GUGGcC-GGCGCCGUG-------CGGCCUGUGUc -5'
11068 3' -63.3 NC_002794.1 + 88957 0.66 0.665937
Target:  5'- uCGCuCGGUacgagCGUGGC-CGCCGGAUcgucgcgGCAGa -3'
miRNA:   3'- -GUG-GCCG-----GCGCCGuGCGGCCUG-------UGUC- -5'
11068 3' -63.3 NC_002794.1 + 145405 0.66 0.665937
Target:  5'- cCGCgCGGCCuuaaagcGCGGCGCGCCGccgucggcuCACGa -3'
miRNA:   3'- -GUG-GCCGG-------CGCCGUGCGGCcu-------GUGUc -5'
11068 3' -63.3 NC_002794.1 + 149691 0.66 0.657361
Target:  5'- gACUGGCCGCGGgGgcCGCCuGGCGgGu -3'
miRNA:   3'- gUGGCCGGCGCCgU--GCGGcCUGUgUc -5'
11068 3' -63.3 NC_002794.1 + 149342 0.66 0.657361
Target:  5'- aACCGGCCGgGGuCGCggggGCgUGGACGgAGu -3'
miRNA:   3'- gUGGCCGGCgCC-GUG----CG-GCCUGUgUC- -5'
11068 3' -63.3 NC_002794.1 + 115339 0.66 0.657361
Target:  5'- -uCCgGGCCGCucGGCACGuCCaGGCgACAGa -3'
miRNA:   3'- guGG-CCGGCG--CCGUGC-GGcCUG-UGUC- -5'
11068 3' -63.3 NC_002794.1 + 26627 0.66 0.657361
Target:  5'- cCACCGuCCGCGuccgcGCAC-CCGGACgGCGGc -3'
miRNA:   3'- -GUGGCcGGCGC-----CGUGcGGCCUG-UGUC- -5'
11068 3' -63.3 NC_002794.1 + 68452 0.66 0.657361
Target:  5'- cCGCCuGGCCcguuucuucaCGGCGCaGUgGGGCACGGa -3'
miRNA:   3'- -GUGG-CCGGc---------GCCGUG-CGgCCUGUGUC- -5'
11068 3' -63.3 NC_002794.1 + 58067 0.66 0.657361
Target:  5'- -cCCGGCgGCGGCGgGaCGGGCGg-- -3'
miRNA:   3'- guGGCCGgCGCCGUgCgGCCUGUguc -5'
11068 3' -63.3 NC_002794.1 + 23945 0.66 0.657361
Target:  5'- -cCCGGCCGCGGCGCacuuggcuCCGaGC-CAGc -3'
miRNA:   3'- guGGCCGGCGCCGUGc-------GGCcUGuGUC- -5'
11068 3' -63.3 NC_002794.1 + 121484 0.66 0.657361
Target:  5'- cCGCCGGUucggaCGCGGCcucCGCCgGGGCgACGa -3'
miRNA:   3'- -GUGGCCG-----GCGCCGu--GCGG-CCUG-UGUc -5'
11068 3' -63.3 NC_002794.1 + 115940 0.66 0.657361
Target:  5'- gGCCGGcCCGCcGCGuguCGCCGGGgACc- -3'
miRNA:   3'- gUGGCC-GGCGcCGU---GCGGCCUgUGuc -5'
11068 3' -63.3 NC_002794.1 + 76831 0.66 0.657361
Target:  5'- cCAgCGGCCgGCGauGCGCGCCGGcCucguCGGc -3'
miRNA:   3'- -GUgGCCGG-CGC--CGUGCGGCCuGu---GUC- -5'
11068 3' -63.3 NC_002794.1 + 131867 0.66 0.657361
Target:  5'- -cCCGacucuugggcGCCGCGGCcucaucucggucGCGCgCGGGCACGu -3'
miRNA:   3'- guGGC----------CGGCGCCG------------UGCG-GCCUGUGUc -5'
11068 3' -63.3 NC_002794.1 + 170551 0.66 0.657361
Target:  5'- --gUGGCCGCcuacGGUguaugcuCGUCGGACACGGg -3'
miRNA:   3'- gugGCCGGCG----CCGu------GCGGCCUGUGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.