miRNA display CGI


Results 41 - 60 of 307 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11068 3' -63.3 NC_002794.1 + 192398 0.66 0.656407
Target:  5'- cCGCCGcGCCGgGGUagucgaaACGCCGcGACGgGu -3'
miRNA:   3'- -GUGGC-CGGCgCCG-------UGCGGC-CUGUgUc -5'
11068 3' -63.3 NC_002794.1 + 111107 0.66 0.656407
Target:  5'- gGCgGGaCCGUGGCcgucgacgGCGCCGGcggccggugcuccACGCGGu -3'
miRNA:   3'- gUGgCC-GGCGCCG--------UGCGGCC-------------UGUGUC- -5'
11068 3' -63.3 NC_002794.1 + 176742 0.66 0.651635
Target:  5'- gACCugugGGuCUGCGGCAUccccgaacgucgaugGaCCGGACACGGa -3'
miRNA:   3'- gUGG----CC-GGCGCCGUG---------------C-GGCCUGUGUC- -5'
11068 3' -63.3 NC_002794.1 + 84002 0.66 0.647816
Target:  5'- gACgGGCaCGacgGGCACGaCGGGCACGa -3'
miRNA:   3'- gUGgCCG-GCg--CCGUGCgGCCUGUGUc -5'
11068 3' -63.3 NC_002794.1 + 89849 0.66 0.647816
Target:  5'- gGCCGGCCGUcccuuucucGGUugGCUuGGCGCc- -3'
miRNA:   3'- gUGGCCGGCG---------CCGugCGGcCUGUGuc -5'
11068 3' -63.3 NC_002794.1 + 125324 0.66 0.647816
Target:  5'- gCGCCGaGCCG-GaGCGCGCCacGGCGCAc -3'
miRNA:   3'- -GUGGC-CGGCgC-CGUGCGGc-CUGUGUc -5'
11068 3' -63.3 NC_002794.1 + 112510 0.66 0.647816
Target:  5'- gAgCGGUCGCGGU--GCUGG-CGCAGg -3'
miRNA:   3'- gUgGCCGGCGCCGugCGGCCuGUGUC- -5'
11068 3' -63.3 NC_002794.1 + 61821 0.66 0.647816
Target:  5'- cCGgCGGCCGcCGGCG-GCCGGcguCACu- -3'
miRNA:   3'- -GUgGCCGGC-GCCGUgCGGCCu--GUGuc -5'
11068 3' -63.3 NC_002794.1 + 128302 0.66 0.647816
Target:  5'- aCACCGagacggcgaCCGUGGCGaccgagccCGcCCGGACGCGGu -3'
miRNA:   3'- -GUGGCc--------GGCGCCGU--------GC-GGCCUGUGUC- -5'
11068 3' -63.3 NC_002794.1 + 101654 0.66 0.64686
Target:  5'- gGCgGGCgGCGGUuagcccguccgaaACGCCGGcggaGCGCGa -3'
miRNA:   3'- gUGgCCGgCGCCG-------------UGCGGCC----UGUGUc -5'
11068 3' -63.3 NC_002794.1 + 58588 0.66 0.64686
Target:  5'- cCACCaG-CGCGGCGgGCUGGccuucgcGCACAGc -3'
miRNA:   3'- -GUGGcCgGCGCCGUgCGGCC-------UGUGUC- -5'
11068 3' -63.3 NC_002794.1 + 18619 0.66 0.643994
Target:  5'- gCACCGGCCGCcccuccgacgcccGCucCGCCGGcACcCGGg -3'
miRNA:   3'- -GUGGCCGGCGc------------CGu-GCGGCC-UGuGUC- -5'
11068 3' -63.3 NC_002794.1 + 192148 0.66 0.638259
Target:  5'- uGCCGG-CGCGGuCGCGgCGGAgccUGCGGu -3'
miRNA:   3'- gUGGCCgGCGCC-GUGCgGCCU---GUGUC- -5'
11068 3' -63.3 NC_002794.1 + 138762 0.66 0.638259
Target:  5'- gGCCGaGUCGCGGCG-GUCGGugGaGGg -3'
miRNA:   3'- gUGGC-CGGCGCCGUgCGGCCugUgUC- -5'
11068 3' -63.3 NC_002794.1 + 120097 0.66 0.638259
Target:  5'- gACCGuGCCGa-GCGCGCCGcgcguGACGCGc -3'
miRNA:   3'- gUGGC-CGGCgcCGUGCGGC-----CUGUGUc -5'
11068 3' -63.3 NC_002794.1 + 89390 0.66 0.638259
Target:  5'- gAgCGGUCGCGGUgagguccguggaGCGCCGG-CGCc- -3'
miRNA:   3'- gUgGCCGGCGCCG------------UGCGGCCuGUGuc -5'
11068 3' -63.3 NC_002794.1 + 52857 0.66 0.638259
Target:  5'- uCGCCacGGCCGCGGCcuuCCGGuACACc- -3'
miRNA:   3'- -GUGG--CCGGCGCCGugcGGCC-UGUGuc -5'
11068 3' -63.3 NC_002794.1 + 195122 0.66 0.638259
Target:  5'- --gCGcCCGCGGCGCGCgCGGGCucGCGu -3'
miRNA:   3'- gugGCcGGCGCCGUGCG-GCCUG--UGUc -5'
11068 3' -63.3 NC_002794.1 + 111625 0.66 0.638259
Target:  5'- gGCC-GCCGCGGCcgcCGCCGGuCGg-- -3'
miRNA:   3'- gUGGcCGGCGCCGu--GCGGCCuGUguc -5'
11068 3' -63.3 NC_002794.1 + 50665 0.66 0.638259
Target:  5'- uGgCGGCCGCGGCGCucGCCGcGAa---- -3'
miRNA:   3'- gUgGCCGGCGCCGUG--CGGC-CUguguc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.