miRNA display CGI


Results 61 - 80 of 307 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11068 3' -63.3 NC_002794.1 + 111625 0.66 0.638259
Target:  5'- gGCC-GCCGCGGCcgcCGCCGGuCGg-- -3'
miRNA:   3'- gUGGcCGGCGCCGu--GCGGCCuGUguc -5'
11068 3' -63.3 NC_002794.1 + 101008 0.66 0.638259
Target:  5'- cCGCgGGCCuuccugucgGgGGaCGCggGCCGGGCGCGGg -3'
miRNA:   3'- -GUGgCCGG---------CgCC-GUG--CGGCCUGUGUC- -5'
11068 3' -63.3 NC_002794.1 + 126558 0.66 0.637303
Target:  5'- aCACCGucGCCGCGGCGgugcUGCUgaucaucuuaccgGGACugAGc -3'
miRNA:   3'- -GUGGC--CGGCGCCGU----GCGG-------------CCUGugUC- -5'
11068 3' -63.3 NC_002794.1 + 126060 0.66 0.628699
Target:  5'- gACUGGUCGCGcGcCugGCCuGGAC-CGGc -3'
miRNA:   3'- gUGGCCGGCGC-C-GugCGG-CCUGuGUC- -5'
11068 3' -63.3 NC_002794.1 + 72466 0.66 0.628699
Target:  5'- -cCCGGCCccGCGGCgGCGCCGaaaagacgaucACGCAGu -3'
miRNA:   3'- guGGCCGG--CGCCG-UGCGGCc----------UGUGUC- -5'
11068 3' -63.3 NC_002794.1 + 99801 0.66 0.628699
Target:  5'- aGCgCGcGCCGCGG-GCGCCGG-CGCc- -3'
miRNA:   3'- gUG-GC-CGGCGCCgUGCGGCCuGUGuc -5'
11068 3' -63.3 NC_002794.1 + 131152 0.66 0.628699
Target:  5'- -uCCGGUCGCacgccagcacGGCGCccgucucgaGCCGGAgACAGc -3'
miRNA:   3'- guGGCCGGCG----------CCGUG---------CGGCCUgUGUC- -5'
11068 3' -63.3 NC_002794.1 + 71097 0.66 0.628699
Target:  5'- aGCCGGUCgccgGCGGcCugGCCGGagagGCGCu- -3'
miRNA:   3'- gUGGCCGG----CGCC-GugCGGCC----UGUGuc -5'
11068 3' -63.3 NC_002794.1 + 143281 0.66 0.628699
Target:  5'- gCGCCGGCCGCucggGGuCGgGCgGGugcaGCGCGGc -3'
miRNA:   3'- -GUGGCCGGCG----CC-GUgCGgCC----UGUGUC- -5'
11068 3' -63.3 NC_002794.1 + 32883 0.67 0.622963
Target:  5'- gCGgCGGCgGCGGCAUcauggagcggaaccaGUCGGGCgGCAGc -3'
miRNA:   3'- -GUgGCCGgCGCCGUG---------------CGGCCUG-UGUC- -5'
11068 3' -63.3 NC_002794.1 + 102509 0.67 0.619141
Target:  5'- gCAgCGGCUgGCGcGCGCGCgGGACGa-- -3'
miRNA:   3'- -GUgGCCGG-CGC-CGUGCGgCCUGUguc -5'
11068 3' -63.3 NC_002794.1 + 54245 0.67 0.619141
Target:  5'- gGCCGaGCgCGCGGUccacggcgccGCGUCGGGCcaaaccguGCAGa -3'
miRNA:   3'- gUGGC-CG-GCGCCG----------UGCGGCCUG--------UGUC- -5'
11068 3' -63.3 NC_002794.1 + 105652 0.67 0.619141
Target:  5'- -uCCGucucGCCGCGGCGCGCuccgccCGGACcgcCGGg -3'
miRNA:   3'- guGGC----CGGCGCCGUGCG------GCCUGu--GUC- -5'
11068 3' -63.3 NC_002794.1 + 131250 0.67 0.619141
Target:  5'- cCGCCGgacGCCGcCGGCAccacCGCCGG-CACc- -3'
miRNA:   3'- -GUGGC---CGGC-GCCGU----GCGGCCuGUGuc -5'
11068 3' -63.3 NC_002794.1 + 128796 0.67 0.619141
Target:  5'- aGCaugaauCCGCGGCACGCgUGGugGCGGc -3'
miRNA:   3'- gUGgcc---GGCGCCGUGCG-GCCugUGUC- -5'
11068 3' -63.3 NC_002794.1 + 119894 0.67 0.619141
Target:  5'- aACUGGCggaucuugGCGGCcgACGCCGGGgACAu -3'
miRNA:   3'- gUGGCCGg-------CGCCG--UGCGGCCUgUGUc -5'
11068 3' -63.3 NC_002794.1 + 108138 0.67 0.609591
Target:  5'- aCGCCGGCUGgauucgccgcCGGgaGCGCCGG-CGCGa -3'
miRNA:   3'- -GUGGCCGGC----------GCCg-UGCGGCCuGUGUc -5'
11068 3' -63.3 NC_002794.1 + 107 0.67 0.609591
Target:  5'- aCGCCGGCCGaCcGCACGaaacgccgaCCGGAgcccgggaccgcCGCAGg -3'
miRNA:   3'- -GUGGCCGGC-GcCGUGC---------GGCCU------------GUGUC- -5'
11068 3' -63.3 NC_002794.1 + 106073 0.67 0.609591
Target:  5'- cCGCCGGCaCGCGGCuuuucuGCGCUacgucuaugGGGaGCGGg -3'
miRNA:   3'- -GUGGCCG-GCGCCG------UGCGG---------CCUgUGUC- -5'
11068 3' -63.3 NC_002794.1 + 73275 0.67 0.609591
Target:  5'- cCGCCGaCCGCGGCgacGCGCcCGGuCuCGGa -3'
miRNA:   3'- -GUGGCcGGCGCCG---UGCG-GCCuGuGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.