miRNA display CGI


Results 1 - 20 of 307 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11068 3' -63.3 NC_002794.1 + 107 0.67 0.609591
Target:  5'- aCGCCGGCCGaCcGCACGaaacgccgaCCGGAgcccgggaccgcCGCAGg -3'
miRNA:   3'- -GUGGCCGGC-GcCGUGC---------GGCCU------------GUGUC- -5'
11068 3' -63.3 NC_002794.1 + 249 0.7 0.403904
Target:  5'- cCACCccggacuGCCGCcGCGCGCgCGGACGCGa -3'
miRNA:   3'- -GUGGc------CGGCGcCGUGCG-GCCUGUGUc -5'
11068 3' -63.3 NC_002794.1 + 285 0.69 0.506727
Target:  5'- aCGgCGGCCcUGGCGCGCCGaACGcCGGg -3'
miRNA:   3'- -GUgGCCGGcGCCGUGCGGCcUGU-GUC- -5'
11068 3' -63.3 NC_002794.1 + 555 0.79 0.113704
Target:  5'- -cCCGGCCuCGGCGCGgCGGugGCAGg -3'
miRNA:   3'- guGGCCGGcGCCGUGCgGCCugUGUC- -5'
11068 3' -63.3 NC_002794.1 + 9164 0.67 0.575376
Target:  5'- aACCGGUCGCGGgcuaagcuauuccucCACGCCGGuCu--- -3'
miRNA:   3'- gUGGCCGGCGCC---------------GUGCGGCCuGuguc -5'
11068 3' -63.3 NC_002794.1 + 11381 0.67 0.590542
Target:  5'- aGCCGGCCuCGaccCACGCCGGcUACAc -3'
miRNA:   3'- gUGGCCGGcGCc--GUGCGGCCuGUGUc -5'
11068 3' -63.3 NC_002794.1 + 11654 0.7 0.445199
Target:  5'- gGCCGacgaCGCGGCcCGCCGGcCACAa -3'
miRNA:   3'- gUGGCcg--GCGCCGuGCGGCCuGUGUc -5'
11068 3' -63.3 NC_002794.1 + 12094 0.66 0.638259
Target:  5'- gACCuGGaCCGaCGGgACGCCGuGGCAgAGc -3'
miRNA:   3'- gUGG-CC-GGC-GCCgUGCGGC-CUGUgUC- -5'
11068 3' -63.3 NC_002794.1 + 12180 0.68 0.543475
Target:  5'- cCGCCGacGCCGCcGCG-GCCGGGCGCc- -3'
miRNA:   3'- -GUGGC--CGGCGcCGUgCGGCCUGUGuc -5'
11068 3' -63.3 NC_002794.1 + 12216 0.69 0.506727
Target:  5'- uGCCGGCgGCgucGGCgGCGCCGGcgGCGCc- -3'
miRNA:   3'- gUGGCCGgCG---CCG-UGCGGCC--UGUGuc -5'
11068 3' -63.3 NC_002794.1 + 14589 0.8 0.100571
Target:  5'- aGCgGGCCGUGGCgagcGCGCCGGGCACc- -3'
miRNA:   3'- gUGgCCGGCGCCG----UGCGGCCUGUGuc -5'
11068 3' -63.3 NC_002794.1 + 16871 0.7 0.403904
Target:  5'- cCACCGccGCCGCGGCAgcaaccaccgcCGCCGcGACAg-- -3'
miRNA:   3'- -GUGGC--CGGCGCCGU-----------GCGGC-CUGUguc -5'
11068 3' -63.3 NC_002794.1 + 17677 0.67 0.581054
Target:  5'- cCGCCGGCCcCGGCGgagaccgaGCCGcacACGCAGu -3'
miRNA:   3'- -GUGGCCGGcGCCGUg-------CGGCc--UGUGUC- -5'
11068 3' -63.3 NC_002794.1 + 18619 0.66 0.643994
Target:  5'- gCACCGGCCGCcccuccgacgcccGCucCGCCGGcACcCGGg -3'
miRNA:   3'- -GUGGCCGGCGc------------CGu-GCGGCC-UGuGUC- -5'
11068 3' -63.3 NC_002794.1 + 18700 0.69 0.471079
Target:  5'- gGCaCGGCgGCGGCGguCCGGACGuCGGa -3'
miRNA:   3'- gUG-GCCGgCGCCGUgcGGCCUGU-GUC- -5'
11068 3' -63.3 NC_002794.1 + 18805 0.68 0.524979
Target:  5'- cCGCCGGCCaacggguCGGCGaccucgGCCGG-CGCGGa -3'
miRNA:   3'- -GUGGCCGGc------GCCGUg-----CGGCCuGUGUC- -5'
11068 3' -63.3 NC_002794.1 + 19259 0.76 0.197033
Target:  5'- gACCGGCCGCGGCcC-CCGuGGCGCGu -3'
miRNA:   3'- gUGGCCGGCGCCGuGcGGC-CUGUGUc -5'
11068 3' -63.3 NC_002794.1 + 19316 0.67 0.600056
Target:  5'- cCGCCcacGCCGCGcuggcgacccGCGCGCCGGuCACc- -3'
miRNA:   3'- -GUGGc--CGGCGC----------CGUGCGGCCuGUGuc -5'
11068 3' -63.3 NC_002794.1 + 19463 0.68 0.56218
Target:  5'- gCGgCGGCgGCGGCGggaccCGCCGGuCGCc- -3'
miRNA:   3'- -GUgGCCGgCGCCGU-----GCGGCCuGUGuc -5'
11068 3' -63.3 NC_002794.1 + 19528 0.72 0.308593
Target:  5'- gCGCCGGCgcggCGCGGCcCGCCGGuguCGGa -3'
miRNA:   3'- -GUGGCCG----GCGCCGuGCGGCCuguGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.