miRNA display CGI


Results 21 - 40 of 307 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11068 3' -63.3 NC_002794.1 + 20376 0.67 0.581054
Target:  5'- gCGCCGGaucgucgaCGCGGUGCGgCgGGAC-CGGg -3'
miRNA:   3'- -GUGGCCg-------GCGCCGUGC-GgCCUGuGUC- -5'
11068 3' -63.3 NC_002794.1 + 20977 0.7 0.403103
Target:  5'- uCACCGGCaGCGGCggcggcagcgaccGCGgCGGcCACAGc -3'
miRNA:   3'- -GUGGCCGgCGCCG-------------UGCgGCCuGUGUC- -5'
11068 3' -63.3 NC_002794.1 + 21371 0.67 0.600056
Target:  5'- gACgCGGCgGCGGC-CGCCgucucuuccucGGACACc- -3'
miRNA:   3'- gUG-GCCGgCGCCGuGCGG-----------CCUGUGuc -5'
11068 3' -63.3 NC_002794.1 + 21880 0.69 0.45288
Target:  5'- gGCCGGCCGCGGgguguccgcggccUGCGUCGGugGUGGc -3'
miRNA:   3'- gUGGCCGGCGCC-------------GUGCGGCCugUGUC- -5'
11068 3' -63.3 NC_002794.1 + 22110 0.69 0.497703
Target:  5'- uCGCCGGCUG-GG-ACGCUcccccuGGACACGGa -3'
miRNA:   3'- -GUGGCCGGCgCCgUGCGG------CCUGUGUC- -5'
11068 3' -63.3 NC_002794.1 + 23605 0.67 0.600056
Target:  5'- cCGCCGacccgaccCCGCgGGCGC-CCGGACGCGc -3'
miRNA:   3'- -GUGGCc-------GGCG-CCGUGcGGCCUGUGUc -5'
11068 3' -63.3 NC_002794.1 + 23945 0.66 0.657361
Target:  5'- -cCCGGCCGCGGCGCacuuggcuCCGaGC-CAGc -3'
miRNA:   3'- guGGCCGGCGCCGUGc-------GGCcUGuGUC- -5'
11068 3' -63.3 NC_002794.1 + 24175 0.67 0.600056
Target:  5'- aACCGGCCucgaccccGCGGCACcgagaCCGaGCGCGGc -3'
miRNA:   3'- gUGGCCGG--------CGCCGUGc----GGCcUGUGUC- -5'
11068 3' -63.3 NC_002794.1 + 26627 0.66 0.657361
Target:  5'- cCACCGuCCGCGuccgcGCAC-CCGGACgGCGGc -3'
miRNA:   3'- -GUGGCcGGCGC-----CGUGcGGCCUG-UGUC- -5'
11068 3' -63.3 NC_002794.1 + 27413 0.72 0.343108
Target:  5'- gACCGGCCGCccGCguccgaACGCaCGGACGCAc -3'
miRNA:   3'- gUGGCCGGCGc-CG------UGCG-GCCUGUGUc -5'
11068 3' -63.3 NC_002794.1 + 29218 0.69 0.471079
Target:  5'- uCGgCGGCCGuCGGC-CGCCGaGCAgAGa -3'
miRNA:   3'- -GUgGCCGGC-GCCGuGCGGCcUGUgUC- -5'
11068 3' -63.3 NC_002794.1 + 30742 0.74 0.264824
Target:  5'- aACUGGCCGCGGCuggcGCGCUGGAgGa-- -3'
miRNA:   3'- gUGGCCGGCGCCG----UGCGGCCUgUguc -5'
11068 3' -63.3 NC_002794.1 + 32017 0.66 0.685864
Target:  5'- gACCaGGCaggggaCGCGGCGCuGCC-GAUACAGc -3'
miRNA:   3'- gUGG-CCG------GCGCCGUG-CGGcCUGUGUC- -5'
11068 3' -63.3 NC_002794.1 + 32295 0.79 0.122336
Target:  5'- cCGCCGccGCCGCGGCggccGCGCCGGcCGCGGc -3'
miRNA:   3'- -GUGGC--CGGCGCCG----UGCGGCCuGUGUC- -5'
11068 3' -63.3 NC_002794.1 + 32883 0.67 0.622963
Target:  5'- gCGgCGGCgGCGGCAUcauggagcggaaccaGUCGGGCgGCAGc -3'
miRNA:   3'- -GUgGCCGgCGCCGUG---------------CGGCCUG-UGUC- -5'
11068 3' -63.3 NC_002794.1 + 33441 0.68 0.550934
Target:  5'- -cCCGGUgcaggaccucggGCGGC-CGCCGGACGCGc -3'
miRNA:   3'- guGGCCGg-----------CGCCGuGCGGCCUGUGUc -5'
11068 3' -63.3 NC_002794.1 + 34080 0.69 0.497703
Target:  5'- cCGCCGGCgGCcgGGCAgcCGUCGGGCGgccCGGa -3'
miRNA:   3'- -GUGGCCGgCG--CCGU--GCGGCCUGU---GUC- -5'
11068 3' -63.3 NC_002794.1 + 34735 0.68 0.515821
Target:  5'- gGgCGGCCGCagagcgcgcgacGGCGCgGUgGGACGCGGc -3'
miRNA:   3'- gUgGCCGGCG------------CCGUG-CGgCCUGUGUC- -5'
11068 3' -63.3 NC_002794.1 + 34864 0.71 0.388078
Target:  5'- gCGCCGcgggcGCCGCGG-ACGCCGcGaACGCGGa -3'
miRNA:   3'- -GUGGC-----CGGCGCCgUGCGGC-C-UGUGUC- -5'
11068 3' -63.3 NC_002794.1 + 34993 0.67 0.581054
Target:  5'- gCGCCGGCUGCGG-GC-CCGG-CACu- -3'
miRNA:   3'- -GUGGCCGGCGCCgUGcGGCCuGUGuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.