miRNA display CGI


Results 41 - 60 of 307 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11068 3' -63.3 NC_002794.1 + 36785 0.71 0.372664
Target:  5'- aGCCGGCCGcCGuGUACGCCGaGguCAGg -3'
miRNA:   3'- gUGGCCGGC-GC-CGUGCGGCcUguGUC- -5'
11068 3' -63.3 NC_002794.1 + 37744 0.77 0.155676
Target:  5'- cCGCCGGCgGCGGCGCGgCGGcGCcgGCGGg -3'
miRNA:   3'- -GUGGCCGgCGCCGUGCgGCC-UG--UGUC- -5'
11068 3' -63.3 NC_002794.1 + 38424 0.72 0.328976
Target:  5'- uCGCCGaCUccaugGCGGCGgGCCGGACugAGg -3'
miRNA:   3'- -GUGGCcGG-----CGCCGUgCGGCCUGugUC- -5'
11068 3' -63.3 NC_002794.1 + 38461 0.81 0.088879
Target:  5'- gGCgCGGCCGCGGCGCGCCcuuuauGGGCGgAGg -3'
miRNA:   3'- gUG-GCCGGCGCCGUGCGG------CCUGUgUC- -5'
11068 3' -63.3 NC_002794.1 + 38634 0.69 0.462366
Target:  5'- uCGCCGG-UGCGGCGCGaCGGAgGCu- -3'
miRNA:   3'- -GUGGCCgGCGCCGUGCgGCCUgUGuc -5'
11068 3' -63.3 NC_002794.1 + 41856 0.69 0.471079
Target:  5'- aGCCccaGGCCGCcgGGCAgGgCCGGGCGCu- -3'
miRNA:   3'- gUGG---CCGGCG--CCGUgC-GGCCUGUGuc -5'
11068 3' -63.3 NC_002794.1 + 42671 0.76 0.179446
Target:  5'- cCGCCGGCaCGgGGUACGCCGaGAC-CGGc -3'
miRNA:   3'- -GUGGCCG-GCgCCGUGCGGC-CUGuGUC- -5'
11068 3' -63.3 NC_002794.1 + 43246 0.68 0.552804
Target:  5'- gCACCGGCCGga--ACGCCGGGugguagcacuCGCAGa -3'
miRNA:   3'- -GUGGCCGGCgccgUGCGGCCU----------GUGUC- -5'
11068 3' -63.3 NC_002794.1 + 43504 0.66 0.676392
Target:  5'- cCGCCaGGCCgGUGaaaGCGCGCCGGuagcuCGCGa -3'
miRNA:   3'- -GUGG-CCGG-CGC---CGUGCGGCCu----GUGUc -5'
11068 3' -63.3 NC_002794.1 + 43681 0.68 0.56218
Target:  5'- -cCCGGgCGCGGacCAUGCCGGAgAucCAGg -3'
miRNA:   3'- guGGCCgGCGCC--GUGCGGCCUgU--GUC- -5'
11068 3' -63.3 NC_002794.1 + 44256 0.71 0.365115
Target:  5'- uGCCGGgCGgcuCGGC-CGCCGGGgACGGa -3'
miRNA:   3'- gUGGCCgGC---GCCGuGCGGCCUgUGUC- -5'
11068 3' -63.3 NC_002794.1 + 44552 0.71 0.365115
Target:  5'- uCGCCGGCgGCGGCGC-CCGuugacgucACGCGGg -3'
miRNA:   3'- -GUGGCCGgCGCCGUGcGGCc-------UGUGUC- -5'
11068 3' -63.3 NC_002794.1 + 44710 0.68 0.552804
Target:  5'- gGCCGcGaCCGCGGCgACGUCGGccgGCGCc- -3'
miRNA:   3'- gUGGC-C-GGCGCCG-UGCGGCC---UGUGuc -5'
11068 3' -63.3 NC_002794.1 + 47962 0.67 0.590542
Target:  5'- gCGCCGGCUG-GGCGacCGCCGcGCGCu- -3'
miRNA:   3'- -GUGGCCGGCgCCGU--GCGGCcUGUGuc -5'
11068 3' -63.3 NC_002794.1 + 48036 0.68 0.534199
Target:  5'- aCGCCGGaCGCcgaguGCGUGCUGGGCACGGc -3'
miRNA:   3'- -GUGGCCgGCGc----CGUGCGGCCUGUGUC- -5'
11068 3' -63.3 NC_002794.1 + 48074 0.67 0.581054
Target:  5'- gGCCGGCCaGCGGgAgcagccgccgcuCGCCGG-CGuCAGg -3'
miRNA:   3'- gUGGCCGG-CGCCgU------------GCGGCCuGU-GUC- -5'
11068 3' -63.3 NC_002794.1 + 48560 0.73 0.302016
Target:  5'- cCGCCGGCCGCccguccagaugGGCGaGCCGGAggaGCGGc -3'
miRNA:   3'- -GUGGCCGGCG-----------CCGUgCGGCCUg--UGUC- -5'
11068 3' -63.3 NC_002794.1 + 49020 0.76 0.179446
Target:  5'- gCGgCGGCCGCGGCGuCGuCCGG-CGCGGu -3'
miRNA:   3'- -GUgGCCGGCGCCGU-GC-GGCCuGUGUC- -5'
11068 3' -63.3 NC_002794.1 + 49410 0.73 0.302016
Target:  5'- aCGgCGGCCGCGGCgGCGgCGGccguCACGGc -3'
miRNA:   3'- -GUgGCCGGCGCCG-UGCgGCCu---GUGUC- -5'
11068 3' -63.3 NC_002794.1 + 49964 0.68 0.543475
Target:  5'- uCGCCGGUCGCGuCACGauuuaauuCCGaACACAGg -3'
miRNA:   3'- -GUGGCCGGCGCcGUGC--------GGCcUGUGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.