miRNA display CGI


Results 1 - 20 of 307 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11068 3' -63.3 NC_002794.1 + 195122 0.66 0.638259
Target:  5'- --gCGcCCGCGGCGCGCgCGGGCucGCGu -3'
miRNA:   3'- gugGCcGGCGCCGUGCG-GCCUG--UGUc -5'
11068 3' -63.3 NC_002794.1 + 194972 0.68 0.524979
Target:  5'- aCGCCGGCuCGUacaGGCacaGCGCCGcGCGCAc -3'
miRNA:   3'- -GUGGCCG-GCG---CCG---UGCGGCcUGUGUc -5'
11068 3' -63.3 NC_002794.1 + 194507 0.67 0.581054
Target:  5'- -cCCGGcCCGCGGCccgcgugcCGCCGGcccaGCAGc -3'
miRNA:   3'- guGGCC-GGCGCCGu-------GCGGCCug--UGUC- -5'
11068 3' -63.3 NC_002794.1 + 193422 0.66 0.666889
Target:  5'- cCGCCGcccgucguccaGCCGUccGGCACGCCGcccACGCAc -3'
miRNA:   3'- -GUGGC-----------CGGCG--CCGUGCGGCc--UGUGUc -5'
11068 3' -63.3 NC_002794.1 + 193299 0.66 0.685864
Target:  5'- uCGCCGuCCGCucCGCGCCGcACGCAGc -3'
miRNA:   3'- -GUGGCcGGCGccGUGCGGCcUGUGUC- -5'
11068 3' -63.3 NC_002794.1 + 193063 0.73 0.295548
Target:  5'- gCACCGGCUGCgGGCcguCGCgGGACagccGCAGc -3'
miRNA:   3'- -GUGGCCGGCG-CCGu--GCGgCCUG----UGUC- -5'
11068 3' -63.3 NC_002794.1 + 192438 0.67 0.590542
Target:  5'- gGCCGGCgCGUcGCGCGCCu--CGCAGu -3'
miRNA:   3'- gUGGCCG-GCGcCGUGCGGccuGUGUC- -5'
11068 3' -63.3 NC_002794.1 + 192398 0.66 0.656407
Target:  5'- cCGCCGcGCCGgGGUagucgaaACGCCGcGACGgGu -3'
miRNA:   3'- -GUGGC-CGGCgCCG-------UGCGGC-CUGUgUc -5'
11068 3' -63.3 NC_002794.1 + 192148 0.66 0.638259
Target:  5'- uGCCGG-CGCGGuCGCGgCGGAgccUGCGGu -3'
miRNA:   3'- gUGGCCgGCGCC-GUGCgGCCU---GUGUC- -5'
11068 3' -63.3 NC_002794.1 + 191871 0.73 0.295548
Target:  5'- gGCCGGCgGCGGaggggGCGgCGGAgGCGGg -3'
miRNA:   3'- gUGGCCGgCGCCg----UGCgGCCUgUGUC- -5'
11068 3' -63.3 NC_002794.1 + 191010 0.75 0.231431
Target:  5'- gAUCGGCCGUucgaucGGCACguucaGCCGGACGCAc -3'
miRNA:   3'- gUGGCCGGCG------CCGUG-----CGGCCUGUGUc -5'
11068 3' -63.3 NC_002794.1 + 190201 0.68 0.524979
Target:  5'- gCGCUccaGcGCCGCGcGCAccCGCCGGGCGCu- -3'
miRNA:   3'- -GUGG---C-CGGCGC-CGU--GCGGCCUGUGuc -5'
11068 3' -63.3 NC_002794.1 + 188366 0.68 0.552804
Target:  5'- gGCCGGCgGCGGC-CGagggcguucucCCGGGCuucucgccGCAGa -3'
miRNA:   3'- gUGGCCGgCGCCGuGC-----------GGCCUG--------UGUC- -5'
11068 3' -63.3 NC_002794.1 + 188288 0.68 0.524979
Target:  5'- uGCaGGgCGCcGCGCGCCGGACcCGGc -3'
miRNA:   3'- gUGgCCgGCGcCGUGCGGCCUGuGUC- -5'
11068 3' -63.3 NC_002794.1 + 188248 0.72 0.328281
Target:  5'- gACCGGCgGCGGCggcgguaGCGgCGGGC-CGGg -3'
miRNA:   3'- gUGGCCGgCGCCG-------UGCgGCCUGuGUC- -5'
11068 3' -63.3 NC_002794.1 + 187716 0.66 0.666889
Target:  5'- uCACgGGCCGCaaCACGCCGcuAUACGGc -3'
miRNA:   3'- -GUGgCCGGCGccGUGCGGCc-UGUGUC- -5'
11068 3' -63.3 NC_002794.1 + 187222 0.71 0.380319
Target:  5'- cCAgCGGCUcCGGCugGCCGcaGCACAGa -3'
miRNA:   3'- -GUgGCCGGcGCCGugCGGCc-UGUGUC- -5'
11068 3' -63.3 NC_002794.1 + 187054 0.68 0.543475
Target:  5'- -cCCGGagcCCGCGGCcCGCCaGGugcCGCAGg -3'
miRNA:   3'- guGGCC---GGCGCCGuGCGG-CCu--GUGUC- -5'
11068 3' -63.3 NC_002794.1 + 186653 0.7 0.420133
Target:  5'- -gUCGGCCGCGcGCACcCCGuACACGGc -3'
miRNA:   3'- guGGCCGGCGC-CGUGcGGCcUGUGUC- -5'
11068 3' -63.3 NC_002794.1 + 186290 0.68 0.515821
Target:  5'- gCACCgcGGCCagGCGGCcgguCGCCGcGGCGCGc -3'
miRNA:   3'- -GUGG--CCGG--CGCCGu---GCGGC-CUGUGUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.