miRNA display CGI


Results 21 - 40 of 307 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11068 3' -63.3 NC_002794.1 + 186073 0.71 0.380319
Target:  5'- cCACCGccGCCGCcGCcuuCGCCGGGCGCu- -3'
miRNA:   3'- -GUGGC--CGGCGcCGu--GCGGCCUGUGuc -5'
11068 3' -63.3 NC_002794.1 + 185762 0.71 0.388078
Target:  5'- cCGCCGG-CGCGGCcgcccgucacACGUCGGccgGCGCGGg -3'
miRNA:   3'- -GUGGCCgGCGCCG----------UGCGGCC---UGUGUC- -5'
11068 3' -63.3 NC_002794.1 + 185551 0.67 0.590542
Target:  5'- -cCCGGCCGCGcGCccCGCCcugccgcggcaGGGCGCGc -3'
miRNA:   3'- guGGCCGGCGC-CGu-GCGG-----------CCUGUGUc -5'
11068 3' -63.3 NC_002794.1 + 185272 0.78 0.134793
Target:  5'- cCGCCGGCCGagugGGC-CGCCGGACAgguCAGc -3'
miRNA:   3'- -GUGGCCGGCg---CCGuGCGGCCUGU---GUC- -5'
11068 3' -63.3 NC_002794.1 + 185171 0.75 0.231431
Target:  5'- cCGCCGG-CGCGGCGCGgUCGG-CGCGGu -3'
miRNA:   3'- -GUGGCCgGCGCCGUGC-GGCCuGUGUC- -5'
11068 3' -63.3 NC_002794.1 + 185068 0.67 0.590542
Target:  5'- aGCC-GCCGCGGCccguCGCCGua-GCAGg -3'
miRNA:   3'- gUGGcCGGCGCCGu---GCGGCcugUGUC- -5'
11068 3' -63.3 NC_002794.1 + 184922 0.69 0.492323
Target:  5'- aCAUCGGCagccgGCGGUcguccugccgcagcuGCGCCGGcccGCGCAGc -3'
miRNA:   3'- -GUGGCCGg----CGCCG---------------UGCGGCC---UGUGUC- -5'
11068 3' -63.3 NC_002794.1 + 184580 0.72 0.315279
Target:  5'- gCGgCGGCgGCGGcCACGCgCGGcCGCGGg -3'
miRNA:   3'- -GUgGCCGgCGCC-GUGCG-GCCuGUGUC- -5'
11068 3' -63.3 NC_002794.1 + 184466 0.71 0.388078
Target:  5'- cCGCgGGCCGCgcgaacGGCGCGCgGGGCccCGGa -3'
miRNA:   3'- -GUGgCCGGCG------CCGUGCGgCCUGu-GUC- -5'
11068 3' -63.3 NC_002794.1 + 184020 0.73 0.282936
Target:  5'- uCGCCGGCCGCcacGGCaccgcgcgcaGCGCgCGGuCGCGGg -3'
miRNA:   3'- -GUGGCCGGCG---CCG----------UGCG-GCCuGUGUC- -5'
11068 3' -63.3 NC_002794.1 + 183693 0.68 0.515821
Target:  5'- gCGCCcGCCGC-GCGCGgCGG-CACAGc -3'
miRNA:   3'- -GUGGcCGGCGcCGUGCgGCCuGUGUC- -5'
11068 3' -63.3 NC_002794.1 + 183177 0.69 0.501304
Target:  5'- aGCCGGUCGgGGaccgagacgcgccgcCACGCCGGcgGCGCGu -3'
miRNA:   3'- gUGGCCGGCgCC---------------GUGCGGCC--UGUGUc -5'
11068 3' -63.3 NC_002794.1 + 181532 0.69 0.471079
Target:  5'- uCGCCcGCCGcCGGCGgGCCGG-CGCu- -3'
miRNA:   3'- -GUGGcCGGC-GCCGUgCGGCCuGUGuc -5'
11068 3' -63.3 NC_002794.1 + 181166 0.73 0.289189
Target:  5'- cCGCCGcGCCGaCGGCgaACGgCGGACACu- -3'
miRNA:   3'- -GUGGC-CGGC-GCCG--UGCgGCCUGUGuc -5'
11068 3' -63.3 NC_002794.1 + 180907 0.72 0.335988
Target:  5'- gACuCGGCCGCGGUcuCGCCGG-CGCc- -3'
miRNA:   3'- gUG-GCCGGCGCCGu-GCGGCCuGUGuc -5'
11068 3' -63.3 NC_002794.1 + 180681 0.72 0.308593
Target:  5'- uCGCCGGCCGCucccGGCGC-CCGGcGgGCGGa -3'
miRNA:   3'- -GUGGCCGGCG----CCGUGcGGCC-UgUGUC- -5'
11068 3' -63.3 NC_002794.1 + 180272 0.68 0.519477
Target:  5'- uCGCCGGUcuccuCGCGGCccgcgccgccgcaacACGCCGGccgGCGCGa -3'
miRNA:   3'- -GUGGCCG-----GCGCCG---------------UGCGGCC---UGUGUc -5'
11068 3' -63.3 NC_002794.1 + 179666 0.7 0.411158
Target:  5'- uCGCCGGacggcacCCGCGGCgGCGaCGGugGCGGc -3'
miRNA:   3'- -GUGGCC-------GGCGCCG-UGCgGCCugUGUC- -5'
11068 3' -63.3 NC_002794.1 + 179205 0.75 0.231431
Target:  5'- -cCCGGCCgGCGGCACGaCGGACGuggccCAGa -3'
miRNA:   3'- guGGCCGG-CGCCGUGCgGCCUGU-----GUC- -5'
11068 3' -63.3 NC_002794.1 + 176742 0.66 0.651635
Target:  5'- gACCugugGGuCUGCGGCAUccccgaacgucgaugGaCCGGACACGGa -3'
miRNA:   3'- gUGG----CC-GGCGCCGUG---------------C-GGCCUGUGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.