Results 41 - 60 of 307 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11068 | 3' | -63.3 | NC_002794.1 | + | 151582 | 0.66 | 0.676392 |
Target: 5'- -cCCGGCgGC-GCGCGCCGccgcCGCGGg -3' miRNA: 3'- guGGCCGgCGcCGUGCGGCcu--GUGUC- -5' |
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11068 | 3' | -63.3 | NC_002794.1 | + | 43504 | 0.66 | 0.676392 |
Target: 5'- cCGCCaGGCCgGUGaaaGCGCGCCGGuagcuCGCGa -3' miRNA: 3'- -GUGG-CCGG-CGC---CGUGCGGCCu----GUGUc -5' |
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11068 | 3' | -63.3 | NC_002794.1 | + | 132901 | 0.66 | 0.685864 |
Target: 5'- -cCCGGaCCuGCGGCG-GCCGGuCACu- -3' miRNA: 3'- guGGCC-GG-CGCCGUgCGGCCuGUGuc -5' |
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11068 | 3' | -63.3 | NC_002794.1 | + | 71061 | 0.66 | 0.685864 |
Target: 5'- aGCCGccGCCGCaGCAgcCGCCGGGuC-CAGa -3' miRNA: 3'- gUGGC--CGGCGcCGU--GCGGCCU-GuGUC- -5' |
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11068 | 3' | -63.3 | NC_002794.1 | + | 193299 | 0.66 | 0.685864 |
Target: 5'- uCGCCGuCCGCucCGCGCCGcACGCAGc -3' miRNA: 3'- -GUGGCcGGCGccGUGCGGCcUGUGUC- -5' |
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11068 | 3' | -63.3 | NC_002794.1 | + | 137651 | 0.66 | 0.675443 |
Target: 5'- gCGCCgGGCCucCGGCGcCGCUGGugcggacGCACGGu -3' miRNA: 3'- -GUGG-CCGGc-GCCGU-GCGGCC-------UGUGUC- -5' |
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11068 | 3' | -63.3 | NC_002794.1 | + | 131195 | 0.66 | 0.676392 |
Target: 5'- gCACgGcGCCGgGGCgGCGCCGGuguACAUg- -3' miRNA: 3'- -GUGgC-CGGCgCCG-UGCGGCC---UGUGuc -5' |
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11068 | 3' | -63.3 | NC_002794.1 | + | 170551 | 0.66 | 0.657361 |
Target: 5'- --gUGGCCGCcuacGGUguaugcuCGUCGGACACGGg -3' miRNA: 3'- gugGCCGGCG----CCGu------GCGGCCUGUGUC- -5' |
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11068 | 3' | -63.3 | NC_002794.1 | + | 79343 | 0.66 | 0.665937 |
Target: 5'- cCGCCcGaUCGCGGCGCagagccuGUCGGACACGc -3' miRNA: 3'- -GUGGcC-GGCGCCGUG-------CGGCCUGUGUc -5' |
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11068 | 3' | -63.3 | NC_002794.1 | + | 88957 | 0.66 | 0.665937 |
Target: 5'- uCGCuCGGUacgagCGUGGC-CGCCGGAUcgucgcgGCAGa -3' miRNA: 3'- -GUG-GCCG-----GCGCCGuGCGGCCUG-------UGUC- -5' |
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11068 | 3' | -63.3 | NC_002794.1 | + | 145405 | 0.66 | 0.665937 |
Target: 5'- cCGCgCGGCCuuaaagcGCGGCGCGCCGccgucggcuCACGa -3' miRNA: 3'- -GUG-GCCGG-------CGCCGUGCGGCcu-------GUGUc -5' |
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11068 | 3' | -63.3 | NC_002794.1 | + | 187716 | 0.66 | 0.666889 |
Target: 5'- uCACgGGCCGCaaCACGCCGcuAUACGGc -3' miRNA: 3'- -GUGgCCGGCGccGUGCGGCc-UGUGUC- -5' |
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11068 | 3' | -63.3 | NC_002794.1 | + | 75365 | 0.66 | 0.666889 |
Target: 5'- cCACCGacccGCCGCGGC-CGgCGGcgGCGGc -3' miRNA: 3'- -GUGGC----CGGCGCCGuGCgGCCugUGUC- -5' |
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11068 | 3' | -63.3 | NC_002794.1 | + | 95767 | 0.66 | 0.666889 |
Target: 5'- gCGgCGGCCGCgacGGCG-GCCGGggcgagagGCGCGGc -3' miRNA: 3'- -GUgGCCGGCG---CCGUgCGGCC--------UGUGUC- -5' |
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11068 | 3' | -63.3 | NC_002794.1 | + | 63486 | 0.66 | 0.666889 |
Target: 5'- cCGCCGucgacgacGCCGCGGCGuCGUCGucCGCGa -3' miRNA: 3'- -GUGGC--------CGGCGCCGU-GCGGCcuGUGUc -5' |
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11068 | 3' | -63.3 | NC_002794.1 | + | 147573 | 0.66 | 0.666889 |
Target: 5'- gGCCaaGGCCgaGCGGCACaCCGaGGCGCu- -3' miRNA: 3'- gUGG--CCGG--CGCCGUGcGGC-CUGUGuc -5' |
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11068 | 3' | -63.3 | NC_002794.1 | + | 107890 | 0.66 | 0.666889 |
Target: 5'- gCGgCGGgUGCGGC-UGCCGGGuCugAGg -3' miRNA: 3'- -GUgGCCgGCGCCGuGCGGCCU-GugUC- -5' |
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11068 | 3' | -63.3 | NC_002794.1 | + | 100054 | 0.66 | 0.666889 |
Target: 5'- gUACCGGCUcaGCGaCACGCUGGAgCugGc -3' miRNA: 3'- -GUGGCCGG--CGCcGUGCGGCCU-GugUc -5' |
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11068 | 3' | -63.3 | NC_002794.1 | + | 193422 | 0.66 | 0.666889 |
Target: 5'- cCGCCGcccgucguccaGCCGUccGGCACGCCGcccACGCAc -3' miRNA: 3'- -GUGGC-----------CGGCG--CCGUGCGGCc--UGUGUc -5' |
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11068 | 3' | -63.3 | NC_002794.1 | + | 69178 | 0.66 | 0.675443 |
Target: 5'- uCACCGGgCGCugauuccGGCACGCgGccCGCAGc -3' miRNA: 3'- -GUGGCCgGCG-------CCGUGCGgCcuGUGUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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