miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11068 5' -55.6 NC_002794.1 + 36874 0.76 0.443424
Target:  5'- uGCAGccGCGCCAGGUaGCgCGUgcAGAGCg -3'
miRNA:   3'- gCGUCa-CGUGGUCCA-CGaGCA--UCUCG- -5'
11068 5' -55.6 NC_002794.1 + 115895 0.75 0.499057
Target:  5'- cCGCGGaGCGCgGGGgGUUCGUGGGGUg -3'
miRNA:   3'- -GCGUCaCGUGgUCCaCGAGCAUCUCG- -5'
11068 5' -55.6 NC_002794.1 + 56166 0.75 0.518292
Target:  5'- gGCAGcgGC-CCcGGUGCaCGUAGAGCa -3'
miRNA:   3'- gCGUCa-CGuGGuCCACGaGCAUCUCG- -5'
11068 5' -55.6 NC_002794.1 + 118494 0.71 0.708515
Target:  5'- cCGCAgGUGCucgugcgggccgACCAGGaccgcccgcugcUGCUCGaGGAGCa -3'
miRNA:   3'- -GCGU-CACG------------UGGUCC------------ACGAGCaUCUCG- -5'
11068 5' -55.6 NC_002794.1 + 48923 0.71 0.737885
Target:  5'- cCGCAGcgccaGCGCCAGGcGCUCGgcGAc- -3'
miRNA:   3'- -GCGUCa----CGUGGUCCaCGAGCauCUcg -5'
11068 5' -55.6 NC_002794.1 + 184947 0.71 0.755133
Target:  5'- cCGCAGcUGCGCCGGcccgcgcagccGCUCGUcGGGCa -3'
miRNA:   3'- -GCGUC-ACGUGGUCca---------CGAGCAuCUCG- -5'
11068 5' -55.6 NC_002794.1 + 141433 0.71 0.757029
Target:  5'- gGCGGggGCGCCGGGgGCgccgGGAGCg -3'
miRNA:   3'- gCGUCa-CGUGGUCCaCGagcaUCUCG- -5'
11068 5' -55.6 NC_002794.1 + 150940 0.71 0.757029
Target:  5'- cCGCGGUcuGCGCUGGGUGUUCG-AGAu- -3'
miRNA:   3'- -GCGUCA--CGUGGUCCACGAGCaUCUcg -5'
11068 5' -55.6 NC_002794.1 + 183051 0.7 0.776663
Target:  5'- gCGUAGUaGC-CCAGGUcGCUCGcgcuggacgggaacgAGAGCg -3'
miRNA:   3'- -GCGUCA-CGuGGUCCA-CGAGCa--------------UCUCG- -5'
11068 5' -55.6 NC_002794.1 + 119721 0.7 0.793948
Target:  5'- gGCGGcuucgGCACCGGGcGCUCGgcGuguuuGCg -3'
miRNA:   3'- gCGUCa----CGUGGUCCaCGAGCauCu----CG- -5'
11068 5' -55.6 NC_002794.1 + 118144 0.69 0.819314
Target:  5'- uCGgGGUGCACCgucauggggcucaGGGUG-UCGUAG-GCg -3'
miRNA:   3'- -GCgUCACGUGG-------------UCCACgAGCAUCuCG- -5'
11068 5' -55.6 NC_002794.1 + 58390 0.69 0.820165
Target:  5'- gCGCGG-GCGCCAGcUGCU---GGAGCa -3'
miRNA:   3'- -GCGUCaCGUGGUCcACGAgcaUCUCG- -5'
11068 5' -55.6 NC_002794.1 + 62097 0.69 0.828579
Target:  5'- aCGCGGcGCGCCGgacggucuGGUGCgUGUcGAGCg -3'
miRNA:   3'- -GCGUCaCGUGGU--------CCACGaGCAuCUCG- -5'
11068 5' -55.6 NC_002794.1 + 127489 0.69 0.836819
Target:  5'- cCGCucUGCGCCGGGaaaUGCUCa-GGAGCu -3'
miRNA:   3'- -GCGucACGUGGUCC---ACGAGcaUCUCG- -5'
11068 5' -55.6 NC_002794.1 + 112863 0.69 0.844876
Target:  5'- aGCAGcUGCugCAGcGcGCccacgggaucgUCGUGGAGCu -3'
miRNA:   3'- gCGUC-ACGugGUC-CaCG-----------AGCAUCUCG- -5'
11068 5' -55.6 NC_002794.1 + 105550 0.68 0.875146
Target:  5'- gGCGGcucggGCGaacggauaGGGUGCgCGUAGAGCa -3'
miRNA:   3'- gCGUCa----CGUgg------UCCACGaGCAUCUCG- -5'
11068 5' -55.6 NC_002794.1 + 149572 0.68 0.884953
Target:  5'- aGCGGacuuuucgacgacucUGCGCCAGGUGgacCGaGGAGCc -3'
miRNA:   3'- gCGUC---------------ACGUGGUCCACga-GCaUCUCG- -5'
11068 5' -55.6 NC_002794.1 + 108866 0.67 0.895635
Target:  5'- gCGCGGU-CACCGGGUccaaCUCGgcGuGCg -3'
miRNA:   3'- -GCGUCAcGUGGUCCAc---GAGCauCuCG- -5'
11068 5' -55.6 NC_002794.1 + 33214 0.67 0.902019
Target:  5'- gCGaCGGUGCGgCAGGU-CUCGgacGAGUg -3'
miRNA:   3'- -GC-GUCACGUgGUCCAcGAGCau-CUCG- -5'
11068 5' -55.6 NC_002794.1 + 102156 0.67 0.902019
Target:  5'- gGCGGcgugcGCGCCGGG-GCcaUCGUGGcGCg -3'
miRNA:   3'- gCGUCa----CGUGGUCCaCG--AGCAUCuCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.