Results 1 - 20 of 36 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11068 | 5' | -55.6 | NC_002794.1 | + | 32584 | 0.66 | 0.930472 |
Target: 5'- gGCGGUGCcgggGCCGGG-GC-CGgggccGGGGCc -3' miRNA: 3'- gCGUCACG----UGGUCCaCGaGCa----UCUCG- -5' |
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11068 | 5' | -55.6 | NC_002794.1 | + | 33214 | 0.67 | 0.902019 |
Target: 5'- gCGaCGGUGCGgCAGGU-CUCGgacGAGUg -3' miRNA: 3'- -GC-GUCACGUgGUCCAcGAGCau-CUCG- -5' |
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11068 | 5' | -55.6 | NC_002794.1 | + | 36359 | 0.67 | 0.925248 |
Target: 5'- gCGCGGc-CACCGGGUGCgcgcccgCGgcGaAGCg -3' miRNA: 3'- -GCGUCacGUGGUCCACGa------GCauC-UCG- -5' |
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11068 | 5' | -55.6 | NC_002794.1 | + | 36874 | 0.76 | 0.443424 |
Target: 5'- uGCAGccGCGCCAGGUaGCgCGUgcAGAGCg -3' miRNA: 3'- gCGUCa-CGUGGUCCA-CGaGCA--UCUCG- -5' |
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11068 | 5' | -55.6 | NC_002794.1 | + | 43618 | 0.66 | 0.953099 |
Target: 5'- aGCAGgacgugGcCGCCAGGaGCUgGUGGAacacGCu -3' miRNA: 3'- gCGUCa-----C-GUGGUCCaCGAgCAUCU----CG- -5' |
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11068 | 5' | -55.6 | NC_002794.1 | + | 47428 | 0.66 | 0.94474 |
Target: 5'- gCGCGGaGCGCCAGGcGUUUcaGgacGGGGCa -3' miRNA: 3'- -GCGUCaCGUGGUCCaCGAG--Ca--UCUCG- -5' |
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11068 | 5' | -55.6 | NC_002794.1 | + | 48923 | 0.71 | 0.737885 |
Target: 5'- cCGCAGcgccaGCGCCAGGcGCUCGgcGAc- -3' miRNA: 3'- -GCGUCa----CGUGGUCCaCGAGCauCUcg -5' |
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11068 | 5' | -55.6 | NC_002794.1 | + | 52957 | 0.66 | 0.930472 |
Target: 5'- aGCAG-GUccucgGCCAGGUGCUCGg----- -3' miRNA: 3'- gCGUCaCG-----UGGUCCACGAGCaucucg -5' |
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11068 | 5' | -55.6 | NC_002794.1 | + | 56166 | 0.75 | 0.518292 |
Target: 5'- gGCAGcgGC-CCcGGUGCaCGUAGAGCa -3' miRNA: 3'- gCGUCa-CGuGGuCCACGaGCAUCUCG- -5' |
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11068 | 5' | -55.6 | NC_002794.1 | + | 56514 | 0.67 | 0.923635 |
Target: 5'- cCGCGG-GCGCUccGGcGCUCGUuccggucgccauccGGAGCg -3' miRNA: 3'- -GCGUCaCGUGGu-CCaCGAGCA--------------UCUCG- -5' |
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11068 | 5' | -55.6 | NC_002794.1 | + | 58390 | 0.69 | 0.820165 |
Target: 5'- gCGCGG-GCGCCAGcUGCU---GGAGCa -3' miRNA: 3'- -GCGUCaCGUGGUCcACGAgcaUCUCG- -5' |
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11068 | 5' | -55.6 | NC_002794.1 | + | 62097 | 0.69 | 0.828579 |
Target: 5'- aCGCGGcGCGCCGgacggucuGGUGCgUGUcGAGCg -3' miRNA: 3'- -GCGUCaCGUGGU--------CCACGaGCAuCUCG- -5' |
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11068 | 5' | -55.6 | NC_002794.1 | + | 101723 | 0.67 | 0.925248 |
Target: 5'- uCGUGGUGCACguGG-GCcagggCGU-GAGCu -3' miRNA: 3'- -GCGUCACGUGguCCaCGa----GCAuCUCG- -5' |
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11068 | 5' | -55.6 | NC_002794.1 | + | 102156 | 0.67 | 0.902019 |
Target: 5'- gGCGGcgugcGCGCCGGG-GCcaUCGUGGcGCg -3' miRNA: 3'- gCGUCa----CGUGGUCCaCG--AGCAUCuCG- -5' |
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11068 | 5' | -55.6 | NC_002794.1 | + | 105550 | 0.68 | 0.875146 |
Target: 5'- gGCGGcucggGCGaacggauaGGGUGCgCGUAGAGCa -3' miRNA: 3'- gCGUCa----CGUgg------UCCACGaGCAUCUCG- -5' |
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11068 | 5' | -55.6 | NC_002794.1 | + | 108866 | 0.67 | 0.895635 |
Target: 5'- gCGCGGU-CACCGGGUccaaCUCGgcGuGCg -3' miRNA: 3'- -GCGUCAcGUGGUCCAc---GAGCauCuCG- -5' |
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11068 | 5' | -55.6 | NC_002794.1 | + | 111760 | 0.67 | 0.908174 |
Target: 5'- cCGCGcgGCGCCgucGGGgcggGCUCGUucgucaGGAGCg -3' miRNA: 3'- -GCGUcaCGUGG---UCCa---CGAGCA------UCUCG- -5' |
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11068 | 5' | -55.6 | NC_002794.1 | + | 112863 | 0.69 | 0.844876 |
Target: 5'- aGCAGcUGCugCAGcGcGCccacgggaucgUCGUGGAGCu -3' miRNA: 3'- gCGUC-ACGugGUC-CaCG-----------AGCAUCUCG- -5' |
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11068 | 5' | -55.6 | NC_002794.1 | + | 114880 | 0.66 | 0.944298 |
Target: 5'- aGCAGcUGCAgCGucugcucGGUccGCUCGaGGAGCg -3' miRNA: 3'- gCGUC-ACGUgGU-------CCA--CGAGCaUCUCG- -5' |
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11068 | 5' | -55.6 | NC_002794.1 | + | 115469 | 0.67 | 0.908174 |
Target: 5'- gGCGG-GgACgCGGGUGCagGUAGAGg -3' miRNA: 3'- gCGUCaCgUG-GUCCACGagCAUCUCg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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