miRNA display CGI


Results 21 - 36 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11068 5' -55.6 NC_002794.1 + 115895 0.75 0.499057
Target:  5'- cCGCGGaGCGCgGGGgGUUCGUGGGGUg -3'
miRNA:   3'- -GCGUCaCGUGgUCCaCGAGCAUCUCG- -5'
11068 5' -55.6 NC_002794.1 + 118144 0.69 0.819314
Target:  5'- uCGgGGUGCACCgucauggggcucaGGGUG-UCGUAG-GCg -3'
miRNA:   3'- -GCgUCACGUGG-------------UCCACgAGCAUCuCG- -5'
11068 5' -55.6 NC_002794.1 + 118494 0.71 0.708515
Target:  5'- cCGCAgGUGCucgugcgggccgACCAGGaccgcccgcugcUGCUCGaGGAGCa -3'
miRNA:   3'- -GCGU-CACG------------UGGUCC------------ACGAGCaUCUCG- -5'
11068 5' -55.6 NC_002794.1 + 119721 0.7 0.793948
Target:  5'- gGCGGcuucgGCACCGGGcGCUCGgcGuguuuGCg -3'
miRNA:   3'- gCGUCa----CGUGGUCCaCGAGCauCu----CG- -5'
11068 5' -55.6 NC_002794.1 + 126291 0.67 0.925248
Target:  5'- uGCuGUGCGCCGcgcgccuggcGGUGCa-GcGGAGCg -3'
miRNA:   3'- gCGuCACGUGGU----------CCACGagCaUCUCG- -5'
11068 5' -55.6 NC_002794.1 + 127489 0.69 0.836819
Target:  5'- cCGCucUGCGCCGGGaaaUGCUCa-GGAGCu -3'
miRNA:   3'- -GCGucACGUGGUCC---ACGAGcaUCUCG- -5'
11068 5' -55.6 NC_002794.1 + 139465 0.66 0.940217
Target:  5'- uCGUcGUGCGCCAGGacgGUggUGUAGAuggGCg -3'
miRNA:   3'- -GCGuCACGUGGUCCa--CGa-GCAUCU---CG- -5'
11068 5' -55.6 NC_002794.1 + 141433 0.71 0.757029
Target:  5'- gGCGGggGCGCCGGGgGCgccgGGAGCg -3'
miRNA:   3'- gCGUCa-CGUGGUCCaCGagcaUCUCG- -5'
11068 5' -55.6 NC_002794.1 + 149572 0.68 0.884953
Target:  5'- aGCGGacuuuucgacgacucUGCGCCAGGUGgacCGaGGAGCc -3'
miRNA:   3'- gCGUC---------------ACGUGGUCCACga-GCaUCUCG- -5'
11068 5' -55.6 NC_002794.1 + 150940 0.71 0.757029
Target:  5'- cCGCGGUcuGCGCUGGGUGUUCG-AGAu- -3'
miRNA:   3'- -GCGUCA--CGUGGUCCACGAGCaUCUcg -5'
11068 5' -55.6 NC_002794.1 + 155912 0.67 0.908174
Target:  5'- gGCucgacGUGCggaGCCGGGUGCUugcCGUcaccGGGGCu -3'
miRNA:   3'- gCGu----CACG---UGGUCCACGA---GCA----UCUCG- -5'
11068 5' -55.6 NC_002794.1 + 183051 0.7 0.776663
Target:  5'- gCGUAGUaGC-CCAGGUcGCUCGcgcuggacgggaacgAGAGCg -3'
miRNA:   3'- -GCGUCA-CGuGGUCCA-CGAGCa--------------UCUCG- -5'
11068 5' -55.6 NC_002794.1 + 184947 0.71 0.755133
Target:  5'- cCGCAGcUGCGCCGGcccgcgcagccGCUCGUcGGGCa -3'
miRNA:   3'- -GCGUC-ACGUGGUCca---------CGAGCAuCUCG- -5'
11068 5' -55.6 NC_002794.1 + 187062 0.67 0.914098
Target:  5'- cCGCGGccCGCCAGGUGC-CGcAG-GCu -3'
miRNA:   3'- -GCGUCacGUGGUCCACGaGCaUCuCG- -5'
11068 5' -55.6 NC_002794.1 + 190367 0.66 0.952304
Target:  5'- gCGCGGcGCAgCGGGUGCUCccgcuccuGCa -3'
miRNA:   3'- -GCGUCaCGUgGUCCACGAGcaucu---CG- -5'
11068 5' -55.6 NC_002794.1 + 193201 0.66 0.94474
Target:  5'- gGUcGUGCgccACCAGGUacagcacgcuucGCUCGUGGucguAGCa -3'
miRNA:   3'- gCGuCACG---UGGUCCA------------CGAGCAUC----UCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.