Results 1 - 20 of 36 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11068 | 5' | -55.6 | NC_002794.1 | + | 193201 | 0.66 | 0.94474 |
Target: 5'- gGUcGUGCgccACCAGGUacagcacgcuucGCUCGUGGucguAGCa -3' miRNA: 3'- gCGuCACG---UGGUCCA------------CGAGCAUC----UCG- -5' |
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11068 | 5' | -55.6 | NC_002794.1 | + | 190367 | 0.66 | 0.952304 |
Target: 5'- gCGCGGcGCAgCGGGUGCUCccgcuccuGCa -3' miRNA: 3'- -GCGUCaCGUgGUCCACGAGcaucu---CG- -5' |
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11068 | 5' | -55.6 | NC_002794.1 | + | 187062 | 0.67 | 0.914098 |
Target: 5'- cCGCGGccCGCCAGGUGC-CGcAG-GCu -3' miRNA: 3'- -GCGUCacGUGGUCCACGaGCaUCuCG- -5' |
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11068 | 5' | -55.6 | NC_002794.1 | + | 184947 | 0.71 | 0.755133 |
Target: 5'- cCGCAGcUGCGCCGGcccgcgcagccGCUCGUcGGGCa -3' miRNA: 3'- -GCGUC-ACGUGGUCca---------CGAGCAuCUCG- -5' |
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11068 | 5' | -55.6 | NC_002794.1 | + | 183051 | 0.7 | 0.776663 |
Target: 5'- gCGUAGUaGC-CCAGGUcGCUCGcgcuggacgggaacgAGAGCg -3' miRNA: 3'- -GCGUCA-CGuGGUCCA-CGAGCa--------------UCUCG- -5' |
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11068 | 5' | -55.6 | NC_002794.1 | + | 155912 | 0.67 | 0.908174 |
Target: 5'- gGCucgacGUGCggaGCCGGGUGCUugcCGUcaccGGGGCu -3' miRNA: 3'- gCGu----CACG---UGGUCCACGA---GCA----UCUCG- -5' |
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11068 | 5' | -55.6 | NC_002794.1 | + | 150940 | 0.71 | 0.757029 |
Target: 5'- cCGCGGUcuGCGCUGGGUGUUCG-AGAu- -3' miRNA: 3'- -GCGUCA--CGUGGUCCACGAGCaUCUcg -5' |
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11068 | 5' | -55.6 | NC_002794.1 | + | 149572 | 0.68 | 0.884953 |
Target: 5'- aGCGGacuuuucgacgacucUGCGCCAGGUGgacCGaGGAGCc -3' miRNA: 3'- gCGUC---------------ACGUGGUCCACga-GCaUCUCG- -5' |
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11068 | 5' | -55.6 | NC_002794.1 | + | 141433 | 0.71 | 0.757029 |
Target: 5'- gGCGGggGCGCCGGGgGCgccgGGAGCg -3' miRNA: 3'- gCGUCa-CGUGGUCCaCGagcaUCUCG- -5' |
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11068 | 5' | -55.6 | NC_002794.1 | + | 139465 | 0.66 | 0.940217 |
Target: 5'- uCGUcGUGCGCCAGGacgGUggUGUAGAuggGCg -3' miRNA: 3'- -GCGuCACGUGGUCCa--CGa-GCAUCU---CG- -5' |
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11068 | 5' | -55.6 | NC_002794.1 | + | 127489 | 0.69 | 0.836819 |
Target: 5'- cCGCucUGCGCCGGGaaaUGCUCa-GGAGCu -3' miRNA: 3'- -GCGucACGUGGUCC---ACGAGcaUCUCG- -5' |
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11068 | 5' | -55.6 | NC_002794.1 | + | 126291 | 0.67 | 0.925248 |
Target: 5'- uGCuGUGCGCCGcgcgccuggcGGUGCa-GcGGAGCg -3' miRNA: 3'- gCGuCACGUGGU----------CCACGagCaUCUCG- -5' |
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11068 | 5' | -55.6 | NC_002794.1 | + | 119721 | 0.7 | 0.793948 |
Target: 5'- gGCGGcuucgGCACCGGGcGCUCGgcGuguuuGCg -3' miRNA: 3'- gCGUCa----CGUGGUCCaCGAGCauCu----CG- -5' |
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11068 | 5' | -55.6 | NC_002794.1 | + | 118494 | 0.71 | 0.708515 |
Target: 5'- cCGCAgGUGCucgugcgggccgACCAGGaccgcccgcugcUGCUCGaGGAGCa -3' miRNA: 3'- -GCGU-CACG------------UGGUCC------------ACGAGCaUCUCG- -5' |
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11068 | 5' | -55.6 | NC_002794.1 | + | 118144 | 0.69 | 0.819314 |
Target: 5'- uCGgGGUGCACCgucauggggcucaGGGUG-UCGUAG-GCg -3' miRNA: 3'- -GCgUCACGUGG-------------UCCACgAGCAUCuCG- -5' |
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11068 | 5' | -55.6 | NC_002794.1 | + | 115895 | 0.75 | 0.499057 |
Target: 5'- cCGCGGaGCGCgGGGgGUUCGUGGGGUg -3' miRNA: 3'- -GCGUCaCGUGgUCCaCGAGCAUCUCG- -5' |
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11068 | 5' | -55.6 | NC_002794.1 | + | 115469 | 0.67 | 0.908174 |
Target: 5'- gGCGG-GgACgCGGGUGCagGUAGAGg -3' miRNA: 3'- gCGUCaCgUG-GUCCACGagCAUCUCg -5' |
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11068 | 5' | -55.6 | NC_002794.1 | + | 114880 | 0.66 | 0.944298 |
Target: 5'- aGCAGcUGCAgCGucugcucGGUccGCUCGaGGAGCg -3' miRNA: 3'- gCGUC-ACGUgGU-------CCA--CGAGCaUCUCG- -5' |
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11068 | 5' | -55.6 | NC_002794.1 | + | 112863 | 0.69 | 0.844876 |
Target: 5'- aGCAGcUGCugCAGcGcGCccacgggaucgUCGUGGAGCu -3' miRNA: 3'- gCGUC-ACGugGUC-CaCG-----------AGCAUCUCG- -5' |
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11068 | 5' | -55.6 | NC_002794.1 | + | 111760 | 0.67 | 0.908174 |
Target: 5'- cCGCGcgGCGCCgucGGGgcggGCUCGUucgucaGGAGCg -3' miRNA: 3'- -GCGUcaCGUGG---UCCa---CGAGCA------UCUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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