miRNA display CGI


Results 1 - 20 of 35 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11069 5' -54.3 NC_002794.1 + 116056 0.66 0.970118
Target:  5'- ----gGGggGAGCGCgacuggggucgCggagCGCUCGGCGc -3'
miRNA:   3'- caucaUCuuCUCGCG-----------Ga---GCGAGUCGC- -5'
11069 5' -54.3 NC_002794.1 + 134278 0.66 0.967084
Target:  5'- cGUGGUguacGGAuacGAGCGCCUCuucgaUCGGCu -3'
miRNA:   3'- -CAUCA----UCUu--CUCGCGGAGcg---AGUCGc -5'
11069 5' -54.3 NC_002794.1 + 48133 0.66 0.967084
Target:  5'- --cGUAGAAGGGCucgaagcCCUCGaCgaggCAGCGg -3'
miRNA:   3'- cauCAUCUUCUCGc------GGAGC-Ga---GUCGC- -5'
11069 5' -54.3 NC_002794.1 + 37078 0.66 0.966769
Target:  5'- --cGgcGAAGcgGGCGCCguugagccgguacUCGUUCAGCGu -3'
miRNA:   3'- cauCauCUUC--UCGCGG-------------AGCGAGUCGC- -5'
11069 5' -54.3 NC_002794.1 + 137591 0.66 0.96384
Target:  5'- -gAGUGcGggGAGcCGCCgccggcggUCGCggCGGCGg -3'
miRNA:   3'- caUCAU-CuuCUC-GCGG--------AGCGa-GUCGC- -5'
11069 5' -54.3 NC_002794.1 + 116882 0.66 0.960378
Target:  5'- --cGUcAGggGGGCGCCggCGCcgucucCGGCGg -3'
miRNA:   3'- cauCA-UCuuCUCGCGGa-GCGa-----GUCGC- -5'
11069 5' -54.3 NC_002794.1 + 115556 0.66 0.956694
Target:  5'- ----cGGggGAGUaGCCgagcaGCUCGGCGa -3'
miRNA:   3'- caucaUCuuCUCG-CGGag---CGAGUCGC- -5'
11069 5' -54.3 NC_002794.1 + 48589 0.67 0.952783
Target:  5'- -cGG-AGGAGcGGCGCgUCGCcgUCGGCGu -3'
miRNA:   3'- caUCaUCUUC-UCGCGgAGCG--AGUCGC- -5'
11069 5' -54.3 NC_002794.1 + 105891 0.67 0.952783
Target:  5'- gGUGGgAGAGGAGuCGCCgCGg-CGGCGg -3'
miRNA:   3'- -CAUCaUCUUCUC-GCGGaGCgaGUCGC- -5'
11069 5' -54.3 NC_002794.1 + 151881 0.67 0.948641
Target:  5'- --cGUGGAAGuGGC-CCUCGaUUCGGCGc -3'
miRNA:   3'- cauCAUCUUC-UCGcGGAGC-GAGUCGC- -5'
11069 5' -54.3 NC_002794.1 + 145367 0.67 0.948641
Target:  5'- uGUGGUcaccgGGcGGAGaCGCUcCGCUCGGUGg -3'
miRNA:   3'- -CAUCA-----UCuUCUC-GCGGaGCGAGUCGC- -5'
11069 5' -54.3 NC_002794.1 + 48216 0.67 0.948641
Target:  5'- -aGGUAGAggcAGAGCaggcggccGCCaUCGUUCGGCc -3'
miRNA:   3'- caUCAUCU---UCUCG--------CGG-AGCGAGUCGc -5'
11069 5' -54.3 NC_002794.1 + 149855 0.67 0.948641
Target:  5'- -gGGgacGAGGAGCgGCCgccCGCUCGGgGg -3'
miRNA:   3'- caUCau-CUUCUCG-CGGa--GCGAGUCgC- -5'
11069 5' -54.3 NC_002794.1 + 79301 0.67 0.944265
Target:  5'- --cGUGGccGAGCGCCUCGauCUCA-CGg -3'
miRNA:   3'- cauCAUCuuCUCGCGGAGC--GAGUcGC- -5'
11069 5' -54.3 NC_002794.1 + 72550 0.67 0.941526
Target:  5'- cGUGGUcgcgcaacgcggccgGGAAGAGCccGCCcaacagcgCGUUCAGCGc -3'
miRNA:   3'- -CAUCA---------------UCUUCUCG--CGGa-------GCGAGUCGC- -5'
11069 5' -54.3 NC_002794.1 + 107765 0.67 0.934802
Target:  5'- ---cUGGcuGGAGCGCgCUCGCcCGGCGa -3'
miRNA:   3'- caucAUCu-UCUCGCG-GAGCGaGUCGC- -5'
11069 5' -54.3 NC_002794.1 + 183594 0.67 0.934802
Target:  5'- gGUGGgggcGGAGGGGgGCCgcgCGCggcCGGCGc -3'
miRNA:   3'- -CAUCa---UCUUCUCgCGGa--GCGa--GUCGC- -5'
11069 5' -54.3 NC_002794.1 + 182672 0.67 0.934802
Target:  5'- aUAGaGGAcccgguccccGGAGCGCUUCGCUU-GCGu -3'
miRNA:   3'- cAUCaUCU----------UCUCGCGGAGCGAGuCGC- -5'
11069 5' -54.3 NC_002794.1 + 143254 0.67 0.92971
Target:  5'- cGUGGUgcaGGAGGAaggcccggcccgGCGCCggcCGCUCGGgGu -3'
miRNA:   3'- -CAUCA---UCUUCU------------CGCGGa--GCGAGUCgC- -5'
11069 5' -54.3 NC_002794.1 + 125874 0.68 0.924378
Target:  5'- --uGUGGGAGAGCuGCCUCGUcUGGUu -3'
miRNA:   3'- cauCAUCUUCUCG-CGGAGCGaGUCGc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.