miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11069 5' -54.3 NC_002794.1 + 187819 0.73 0.68298
Target:  5'- -gAGUgAGcGGAGCGCgCUCgGCUCGGCGc -3'
miRNA:   3'- caUCA-UCuUCUCGCG-GAG-CGAGUCGC- -5'
11069 5' -54.3 NC_002794.1 + 119238 0.72 0.723227
Target:  5'- -cGGUcGAGGAGCGUgUC-CUCGGCGg -3'
miRNA:   3'- caUCAuCUUCUCGCGgAGcGAGUCGC- -5'
11069 5' -54.3 NC_002794.1 + 49080 0.72 0.733114
Target:  5'- -cGGUaccAGAAGAcguacccgucGCGCCggCGCUCGGCGu -3'
miRNA:   3'- caUCA---UCUUCU----------CGCGGa-GCGAGUCGC- -5'
11069 5' -54.3 NC_002794.1 + 112942 0.72 0.752615
Target:  5'- uGUGGUGGuuGAGCagGUCUUGC-CAGCGg -3'
miRNA:   3'- -CAUCAUCuuCUCG--CGGAGCGaGUCGC- -5'
11069 5' -54.3 NC_002794.1 + 38156 0.72 0.752615
Target:  5'- -aGGUAGgcGAGCaggcgGCUgCGCUCGGCGa -3'
miRNA:   3'- caUCAUCuuCUCG-----CGGaGCGAGUCGC- -5'
11069 5' -54.3 NC_002794.1 + 117657 0.71 0.79026
Target:  5'- -----cGAAGAGCGCCaCGCgCGGCGg -3'
miRNA:   3'- caucauCUUCUCGCGGaGCGaGUCGC- -5'
11069 5' -54.3 NC_002794.1 + 128978 0.69 0.858135
Target:  5'- cUGGUgcAGAuccGAGCGCuCUaGCUCGGCGg -3'
miRNA:   3'- cAUCA--UCUu--CUCGCG-GAgCGAGUCGC- -5'
11069 5' -54.3 NC_002794.1 + 157739 0.69 0.858135
Target:  5'- -cGG-AGGAGAGCGUUcgCGCUCAGUu -3'
miRNA:   3'- caUCaUCUUCUCGCGGa-GCGAGUCGc -5'
11069 5' -54.3 NC_002794.1 + 143086 0.69 0.865014
Target:  5'- cGUAGUGGAGGuuGCgcggcguguuccaGCCcCGCUCGGCc -3'
miRNA:   3'- -CAUCAUCUUCu-CG-------------CGGaGCGAGUCGc -5'
11069 5' -54.3 NC_002794.1 + 85788 0.69 0.873189
Target:  5'- ----cGGAccgGGAGCcaucuuGCCUCGCUCGGCu -3'
miRNA:   3'- caucaUCU---UCUCG------CGGAGCGAGUCGc -5'
11069 5' -54.3 NC_002794.1 + 113073 0.69 0.873189
Target:  5'- -aGGUAcuccuGGAGCGCCUCgGCgaaCGGCGg -3'
miRNA:   3'- caUCAUcu---UCUCGCGGAG-CGa--GUCGC- -5'
11069 5' -54.3 NC_002794.1 + 40827 0.68 0.906939
Target:  5'- -cGGUAGAccGGuGCGCCUgccgaccucgCGCUCccAGCGa -3'
miRNA:   3'- caUCAUCU--UCuCGCGGA----------GCGAG--UCGC- -5'
11069 5' -54.3 NC_002794.1 + 44309 0.68 0.906939
Target:  5'- -gAGgcGggGAGCGaCCgcgagCGCggCGGCGa -3'
miRNA:   3'- caUCauCuuCUCGC-GGa----GCGa-GUCGC- -5'
11069 5' -54.3 NC_002794.1 + 150062 0.68 0.912991
Target:  5'- -cGGUGGGAcGAGCGCgCUcuggccuuccugCGCUgGGCGg -3'
miRNA:   3'- caUCAUCUU-CUCGCG-GA------------GCGAgUCGC- -5'
11069 5' -54.3 NC_002794.1 + 129259 0.68 0.918805
Target:  5'- ----gGGucGAGCGCCUCGUcgUgAGCGg -3'
miRNA:   3'- caucaUCuuCUCGCGGAGCG--AgUCGC- -5'
11069 5' -54.3 NC_002794.1 + 125874 0.68 0.924378
Target:  5'- --uGUGGGAGAGCuGCCUCGUcUGGUu -3'
miRNA:   3'- cauCAUCUUCUCG-CGGAGCGaGUCGc -5'
11069 5' -54.3 NC_002794.1 + 143254 0.67 0.92971
Target:  5'- cGUGGUgcaGGAGGAaggcccggcccgGCGCCggcCGCUCGGgGu -3'
miRNA:   3'- -CAUCA---UCUUCU------------CGCGGa--GCGAGUCgC- -5'
11069 5' -54.3 NC_002794.1 + 107765 0.67 0.934802
Target:  5'- ---cUGGcuGGAGCGCgCUCGCcCGGCGa -3'
miRNA:   3'- caucAUCu-UCUCGCG-GAGCGaGUCGC- -5'
11069 5' -54.3 NC_002794.1 + 183594 0.67 0.934802
Target:  5'- gGUGGgggcGGAGGGGgGCCgcgCGCggcCGGCGc -3'
miRNA:   3'- -CAUCa---UCUUCUCgCGGa--GCGa--GUCGC- -5'
11069 5' -54.3 NC_002794.1 + 182672 0.67 0.934802
Target:  5'- aUAGaGGAcccgguccccGGAGCGCUUCGCUU-GCGu -3'
miRNA:   3'- cAUCaUCU----------UCUCGCGGAGCGAGuCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.