Results 1 - 20 of 35 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11069 | 5' | -54.3 | NC_002794.1 | + | 37078 | 0.66 | 0.966769 |
Target: 5'- --cGgcGAAGcgGGCGCCguugagccgguacUCGUUCAGCGu -3' miRNA: 3'- cauCauCUUC--UCGCGG-------------AGCGAGUCGC- -5' |
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11069 | 5' | -54.3 | NC_002794.1 | + | 38156 | 0.72 | 0.752615 |
Target: 5'- -aGGUAGgcGAGCaggcgGCUgCGCUCGGCGa -3' miRNA: 3'- caUCAUCuuCUCG-----CGGaGCGAGUCGC- -5' |
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11069 | 5' | -54.3 | NC_002794.1 | + | 40827 | 0.68 | 0.906939 |
Target: 5'- -cGGUAGAccGGuGCGCCUgccgaccucgCGCUCccAGCGa -3' miRNA: 3'- caUCAUCU--UCuCGCGGA----------GCGAG--UCGC- -5' |
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11069 | 5' | -54.3 | NC_002794.1 | + | 44309 | 0.68 | 0.906939 |
Target: 5'- -gAGgcGggGAGCGaCCgcgagCGCggCGGCGa -3' miRNA: 3'- caUCauCuuCUCGC-GGa----GCGa-GUCGC- -5' |
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11069 | 5' | -54.3 | NC_002794.1 | + | 48133 | 0.66 | 0.967084 |
Target: 5'- --cGUAGAAGGGCucgaagcCCUCGaCgaggCAGCGg -3' miRNA: 3'- cauCAUCUUCUCGc------GGAGC-Ga---GUCGC- -5' |
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11069 | 5' | -54.3 | NC_002794.1 | + | 48216 | 0.67 | 0.948641 |
Target: 5'- -aGGUAGAggcAGAGCaggcggccGCCaUCGUUCGGCc -3' miRNA: 3'- caUCAUCU---UCUCG--------CGG-AGCGAGUCGc -5' |
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11069 | 5' | -54.3 | NC_002794.1 | + | 48589 | 0.67 | 0.952783 |
Target: 5'- -cGG-AGGAGcGGCGCgUCGCcgUCGGCGu -3' miRNA: 3'- caUCaUCUUC-UCGCGgAGCG--AGUCGC- -5' |
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11069 | 5' | -54.3 | NC_002794.1 | + | 49080 | 0.72 | 0.733114 |
Target: 5'- -cGGUaccAGAAGAcguacccgucGCGCCggCGCUCGGCGu -3' miRNA: 3'- caUCA---UCUUCU----------CGCGGa-GCGAGUCGC- -5' |
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11069 | 5' | -54.3 | NC_002794.1 | + | 72550 | 0.67 | 0.941526 |
Target: 5'- cGUGGUcgcgcaacgcggccgGGAAGAGCccGCCcaacagcgCGUUCAGCGc -3' miRNA: 3'- -CAUCA---------------UCUUCUCG--CGGa-------GCGAGUCGC- -5' |
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11069 | 5' | -54.3 | NC_002794.1 | + | 79301 | 0.67 | 0.944265 |
Target: 5'- --cGUGGccGAGCGCCUCGauCUCA-CGg -3' miRNA: 3'- cauCAUCuuCUCGCGGAGC--GAGUcGC- -5' |
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11069 | 5' | -54.3 | NC_002794.1 | + | 85788 | 0.69 | 0.873189 |
Target: 5'- ----cGGAccgGGAGCcaucuuGCCUCGCUCGGCu -3' miRNA: 3'- caucaUCU---UCUCG------CGGAGCGAGUCGc -5' |
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11069 | 5' | -54.3 | NC_002794.1 | + | 105891 | 0.67 | 0.952783 |
Target: 5'- gGUGGgAGAGGAGuCGCCgCGg-CGGCGg -3' miRNA: 3'- -CAUCaUCUUCUC-GCGGaGCgaGUCGC- -5' |
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11069 | 5' | -54.3 | NC_002794.1 | + | 107765 | 0.67 | 0.934802 |
Target: 5'- ---cUGGcuGGAGCGCgCUCGCcCGGCGa -3' miRNA: 3'- caucAUCu-UCUCGCG-GAGCGaGUCGC- -5' |
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11069 | 5' | -54.3 | NC_002794.1 | + | 112942 | 0.72 | 0.752615 |
Target: 5'- uGUGGUGGuuGAGCagGUCUUGC-CAGCGg -3' miRNA: 3'- -CAUCAUCuuCUCG--CGGAGCGaGUCGC- -5' |
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11069 | 5' | -54.3 | NC_002794.1 | + | 113073 | 0.69 | 0.873189 |
Target: 5'- -aGGUAcuccuGGAGCGCCUCgGCgaaCGGCGg -3' miRNA: 3'- caUCAUcu---UCUCGCGGAG-CGa--GUCGC- -5' |
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11069 | 5' | -54.3 | NC_002794.1 | + | 115556 | 0.66 | 0.956694 |
Target: 5'- ----cGGggGAGUaGCCgagcaGCUCGGCGa -3' miRNA: 3'- caucaUCuuCUCG-CGGag---CGAGUCGC- -5' |
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11069 | 5' | -54.3 | NC_002794.1 | + | 116056 | 0.66 | 0.970118 |
Target: 5'- ----gGGggGAGCGCgacuggggucgCggagCGCUCGGCGc -3' miRNA: 3'- caucaUCuuCUCGCG-----------Ga---GCGAGUCGC- -5' |
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11069 | 5' | -54.3 | NC_002794.1 | + | 116882 | 0.66 | 0.960378 |
Target: 5'- --cGUcAGggGGGCGCCggCGCcgucucCGGCGg -3' miRNA: 3'- cauCA-UCuuCUCGCGGa-GCGa-----GUCGC- -5' |
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11069 | 5' | -54.3 | NC_002794.1 | + | 117657 | 0.71 | 0.79026 |
Target: 5'- -----cGAAGAGCGCCaCGCgCGGCGg -3' miRNA: 3'- caucauCUUCUCGCGGaGCGaGUCGC- -5' |
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11069 | 5' | -54.3 | NC_002794.1 | + | 119238 | 0.72 | 0.723227 |
Target: 5'- -cGGUcGAGGAGCGUgUC-CUCGGCGg -3' miRNA: 3'- caUCAuCUUCUCGCGgAGcGAGUCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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