miRNA display CGI


Results 21 - 35 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11069 5' -54.3 NC_002794.1 + 125874 0.68 0.924378
Target:  5'- --uGUGGGAGAGCuGCCUCGUcUGGUu -3'
miRNA:   3'- cauCAUCUUCUCG-CGGAGCGaGUCGc -5'
11069 5' -54.3 NC_002794.1 + 128978 0.69 0.858135
Target:  5'- cUGGUgcAGAuccGAGCGCuCUaGCUCGGCGg -3'
miRNA:   3'- cAUCA--UCUu--CUCGCG-GAgCGAGUCGC- -5'
11069 5' -54.3 NC_002794.1 + 129259 0.68 0.918805
Target:  5'- ----gGGucGAGCGCCUCGUcgUgAGCGg -3'
miRNA:   3'- caucaUCuuCUCGCGGAGCG--AgUCGC- -5'
11069 5' -54.3 NC_002794.1 + 134278 0.66 0.967084
Target:  5'- cGUGGUguacGGAuacGAGCGCCUCuucgaUCGGCu -3'
miRNA:   3'- -CAUCA----UCUu--CUCGCGGAGcg---AGUCGc -5'
11069 5' -54.3 NC_002794.1 + 137591 0.66 0.96384
Target:  5'- -gAGUGcGggGAGcCGCCgccggcggUCGCggCGGCGg -3'
miRNA:   3'- caUCAU-CuuCUC-GCGG--------AGCGa-GUCGC- -5'
11069 5' -54.3 NC_002794.1 + 143086 0.69 0.865014
Target:  5'- cGUAGUGGAGGuuGCgcggcguguuccaGCCcCGCUCGGCc -3'
miRNA:   3'- -CAUCAUCUUCu-CG-------------CGGaGCGAGUCGc -5'
11069 5' -54.3 NC_002794.1 + 143254 0.67 0.92971
Target:  5'- cGUGGUgcaGGAGGAaggcccggcccgGCGCCggcCGCUCGGgGu -3'
miRNA:   3'- -CAUCA---UCUUCU------------CGCGGa--GCGAGUCgC- -5'
11069 5' -54.3 NC_002794.1 + 145367 0.67 0.948641
Target:  5'- uGUGGUcaccgGGcGGAGaCGCUcCGCUCGGUGg -3'
miRNA:   3'- -CAUCA-----UCuUCUC-GCGGaGCGAGUCGC- -5'
11069 5' -54.3 NC_002794.1 + 149855 0.67 0.948641
Target:  5'- -gGGgacGAGGAGCgGCCgccCGCUCGGgGg -3'
miRNA:   3'- caUCau-CUUCUCG-CGGa--GCGAGUCgC- -5'
11069 5' -54.3 NC_002794.1 + 150062 0.68 0.912991
Target:  5'- -cGGUGGGAcGAGCGCgCUcuggccuuccugCGCUgGGCGg -3'
miRNA:   3'- caUCAUCUU-CUCGCG-GA------------GCGAgUCGC- -5'
11069 5' -54.3 NC_002794.1 + 151881 0.67 0.948641
Target:  5'- --cGUGGAAGuGGC-CCUCGaUUCGGCGc -3'
miRNA:   3'- cauCAUCUUC-UCGcGGAGC-GAGUCGC- -5'
11069 5' -54.3 NC_002794.1 + 157739 0.69 0.858135
Target:  5'- -cGG-AGGAGAGCGUUcgCGCUCAGUu -3'
miRNA:   3'- caUCaUCUUCUCGCGGa-GCGAGUCGc -5'
11069 5' -54.3 NC_002794.1 + 182672 0.67 0.934802
Target:  5'- aUAGaGGAcccgguccccGGAGCGCUUCGCUU-GCGu -3'
miRNA:   3'- cAUCaUCU----------UCUCGCGGAGCGAGuCGC- -5'
11069 5' -54.3 NC_002794.1 + 183594 0.67 0.934802
Target:  5'- gGUGGgggcGGAGGGGgGCCgcgCGCggcCGGCGc -3'
miRNA:   3'- -CAUCa---UCUUCUCgCGGa--GCGa--GUCGC- -5'
11069 5' -54.3 NC_002794.1 + 187819 0.73 0.68298
Target:  5'- -gAGUgAGcGGAGCGCgCUCgGCUCGGCGc -3'
miRNA:   3'- caUCA-UCuUCUCGCG-GAG-CGAGUCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.