miRNA display CGI


Results 1 - 20 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11070 3' -56.7 NC_002794.1 + 125902 0.66 0.947017
Target:  5'- gGCCGUCCucGcCUGGCcgCGACUCaCGCu -3'
miRNA:   3'- gCGGCAGG--CaGGCUGa-GUUGAG-GUGc -5'
11070 3' -56.7 NC_002794.1 + 147275 0.66 0.947017
Target:  5'- uGCCGUggCCGUCCGGCUgcaCGAUcaUCUuCGg -3'
miRNA:   3'- gCGGCA--GGCAGGCUGA---GUUG--AGGuGC- -5'
11070 3' -56.7 NC_002794.1 + 53366 0.66 0.947017
Target:  5'- cCGCCGgguccCCGUCgagCGACUCGAa--CACGu -3'
miRNA:   3'- -GCGGCa----GGCAG---GCUGAGUUgagGUGC- -5'
11070 3' -56.7 NC_002794.1 + 44419 0.66 0.947017
Target:  5'- gGCCGgcgCCGagCGGCUCGACgacaCCGgCGc -3'
miRNA:   3'- gCGGCa--GGCagGCUGAGUUGa---GGU-GC- -5'
11070 3' -56.7 NC_002794.1 + 183620 0.66 0.946599
Target:  5'- gGCCGgcgcccCCGcgcccCCGACUCGAgcagggccgccuuCUCCGCGc -3'
miRNA:   3'- gCGGCa-----GGCa----GGCUGAGUU-------------GAGGUGC- -5'
11070 3' -56.7 NC_002794.1 + 192476 0.66 0.94274
Target:  5'- gCGCCGagcccUCGUCCGcCUCGuC-CCACGg -3'
miRNA:   3'- -GCGGCa----GGCAGGCuGAGUuGaGGUGC- -5'
11070 3' -56.7 NC_002794.1 + 179868 0.66 0.94274
Target:  5'- uCGCCgGUCUGUCCGGCgacgggUAAUagCACa -3'
miRNA:   3'- -GCGG-CAGGCAGGCUGa-----GUUGagGUGc -5'
11070 3' -56.7 NC_002794.1 + 110283 0.66 0.94274
Target:  5'- cCGCCGUCC-UCgGGCcCGAgagCCGCGg -3'
miRNA:   3'- -GCGGCAGGcAGgCUGaGUUga-GGUGC- -5'
11070 3' -56.7 NC_002794.1 + 185415 0.66 0.94274
Target:  5'- cCGaCCG-CCGU-CGACUCGACgcggcgCCAUGc -3'
miRNA:   3'- -GC-GGCaGGCAgGCUGAGUUGa-----GGUGC- -5'
11070 3' -56.7 NC_002794.1 + 49025 0.66 0.9423
Target:  5'- gGCCGcggcgUCGUCCGGCgcggucgUCAGCgUCCAgGg -3'
miRNA:   3'- gCGGCa----GGCAGGCUG-------AGUUG-AGGUgC- -5'
11070 3' -56.7 NC_002794.1 + 128763 0.66 0.938244
Target:  5'- aGCgGUCCGgucagggCCGGgUgGACUCC-CGa -3'
miRNA:   3'- gCGgCAGGCa------GGCUgAgUUGAGGuGC- -5'
11070 3' -56.7 NC_002794.1 + 63926 0.66 0.938244
Target:  5'- cCGCCGcCCGgCCGGCgagucUCGAgUCCgACGc -3'
miRNA:   3'- -GCGGCaGGCaGGCUG-----AGUUgAGG-UGC- -5'
11070 3' -56.7 NC_002794.1 + 67224 0.66 0.938244
Target:  5'- gCGCCGggCGgcuaaCCGcguCUCGAUUCCGCGc -3'
miRNA:   3'- -GCGGCagGCa----GGCu--GAGUUGAGGUGC- -5'
11070 3' -56.7 NC_002794.1 + 83706 0.66 0.938244
Target:  5'- gGCC-UCUGccagaUCCGACUCAagacGCUCCuCGa -3'
miRNA:   3'- gCGGcAGGC-----AGGCUGAGU----UGAGGuGC- -5'
11070 3' -56.7 NC_002794.1 + 130652 0.66 0.938244
Target:  5'- cCGCCGccccgCCG-CCGGC-CGcggGCUCCGCc -3'
miRNA:   3'- -GCGGCa----GGCaGGCUGaGU---UGAGGUGc -5'
11070 3' -56.7 NC_002794.1 + 151917 0.66 0.938244
Target:  5'- gGCCGagcUCCGUCugCGGCgCAagcGCUCCGCc -3'
miRNA:   3'- gCGGC---AGGCAG--GCUGaGU---UGAGGUGc -5'
11070 3' -56.7 NC_002794.1 + 184296 0.66 0.933529
Target:  5'- cCGCCGccuccCCGUCCcagaGCaCGGCUCCGCu -3'
miRNA:   3'- -GCGGCa----GGCAGGc---UGaGUUGAGGUGc -5'
11070 3' -56.7 NC_002794.1 + 193429 0.66 0.933529
Target:  5'- cCGUCGUccagCCGUCCGGCacgCcGC-CCACGc -3'
miRNA:   3'- -GCGGCA----GGCAGGCUGa--GuUGaGGUGC- -5'
11070 3' -56.7 NC_002794.1 + 113514 0.66 0.933529
Target:  5'- aGCCGcggagggagcUCCG-CCGGCUCGGCgUCGCc -3'
miRNA:   3'- gCGGC----------AGGCaGGCUGAGUUGaGGUGc -5'
11070 3' -56.7 NC_002794.1 + 182631 0.66 0.928591
Target:  5'- cCGCCGUCCagcgCCGuCUCcugGGCUCgCACc -3'
miRNA:   3'- -GCGGCAGGca--GGCuGAG---UUGAG-GUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.