Results 21 - 40 of 123 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11070 | 3' | -56.7 | NC_002794.1 | + | 183620 | 0.66 | 0.946599 |
Target: 5'- gGCCGgcgcccCCGcgcccCCGACUCGAgcagggccgccuuCUCCGCGc -3' miRNA: 3'- gCGGCa-----GGCa----GGCUGAGUU-------------GAGGUGC- -5' |
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11070 | 3' | -56.7 | NC_002794.1 | + | 44419 | 0.66 | 0.947017 |
Target: 5'- gGCCGgcgCCGagCGGCUCGACgacaCCGgCGc -3' miRNA: 3'- gCGGCa--GGCagGCUGAGUUGa---GGU-GC- -5' |
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11070 | 3' | -56.7 | NC_002794.1 | + | 185415 | 0.66 | 0.94274 |
Target: 5'- cCGaCCG-CCGU-CGACUCGACgcggcgCCAUGc -3' miRNA: 3'- -GC-GGCaGGCAgGCUGAGUUGa-----GGUGC- -5' |
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11070 | 3' | -56.7 | NC_002794.1 | + | 110283 | 0.66 | 0.94274 |
Target: 5'- cCGCCGUCC-UCgGGCcCGAgagCCGCGg -3' miRNA: 3'- -GCGGCAGGcAGgCUGaGUUga-GGUGC- -5' |
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11070 | 3' | -56.7 | NC_002794.1 | + | 179868 | 0.66 | 0.94274 |
Target: 5'- uCGCCgGUCUGUCCGGCgacgggUAAUagCACa -3' miRNA: 3'- -GCGG-CAGGCAGGCUGa-----GUUGagGUGc -5' |
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11070 | 3' | -56.7 | NC_002794.1 | + | 67224 | 0.66 | 0.938244 |
Target: 5'- gCGCCGggCGgcuaaCCGcguCUCGAUUCCGCGc -3' miRNA: 3'- -GCGGCagGCa----GGCu--GAGUUGAGGUGC- -5' |
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11070 | 3' | -56.7 | NC_002794.1 | + | 83706 | 0.66 | 0.938244 |
Target: 5'- gGCC-UCUGccagaUCCGACUCAagacGCUCCuCGa -3' miRNA: 3'- gCGGcAGGC-----AGGCUGAGU----UGAGGuGC- -5' |
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11070 | 3' | -56.7 | NC_002794.1 | + | 130652 | 0.66 | 0.938244 |
Target: 5'- cCGCCGccccgCCG-CCGGC-CGcggGCUCCGCc -3' miRNA: 3'- -GCGGCa----GGCaGGCUGaGU---UGAGGUGc -5' |
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11070 | 3' | -56.7 | NC_002794.1 | + | 151917 | 0.66 | 0.938244 |
Target: 5'- gGCCGagcUCCGUCugCGGCgCAagcGCUCCGCc -3' miRNA: 3'- gCGGC---AGGCAG--GCUGaGU---UGAGGUGc -5' |
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11070 | 3' | -56.7 | NC_002794.1 | + | 192476 | 0.66 | 0.94274 |
Target: 5'- gCGCCGagcccUCGUCCGcCUCGuC-CCACGg -3' miRNA: 3'- -GCGGCa----GGCAGGCuGAGUuGaGGUGC- -5' |
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11070 | 3' | -56.7 | NC_002794.1 | + | 49025 | 0.66 | 0.9423 |
Target: 5'- gGCCGcggcgUCGUCCGGCgcggucgUCAGCgUCCAgGg -3' miRNA: 3'- gCGGCa----GGCAGGCUG-------AGUUG-AGGUgC- -5' |
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11070 | 3' | -56.7 | NC_002794.1 | + | 150774 | 0.67 | 0.912452 |
Target: 5'- uCGUCGU-CGUCgGGCUCGugcgACUCCAgGc -3' miRNA: 3'- -GCGGCAgGCAGgCUGAGU----UGAGGUgC- -5' |
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11070 | 3' | -56.7 | NC_002794.1 | + | 69833 | 0.67 | 0.918053 |
Target: 5'- cCGCCcgGUCCG-CUGGCUCAccGCcUCGCGa -3' miRNA: 3'- -GCGG--CAGGCaGGCUGAGU--UGaGGUGC- -5' |
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11070 | 3' | -56.7 | NC_002794.1 | + | 84730 | 0.67 | 0.918053 |
Target: 5'- uCGCCc-CCGaCCGACggCAACgCCACGa -3' miRNA: 3'- -GCGGcaGGCaGGCUGa-GUUGaGGUGC- -5' |
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11070 | 3' | -56.7 | NC_002794.1 | + | 91638 | 0.67 | 0.918053 |
Target: 5'- gCGCCGcCUGUCCGAgCUgaAGCUgCACc -3' miRNA: 3'- -GCGGCaGGCAGGCU-GAg-UUGAgGUGc -5' |
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11070 | 3' | -56.7 | NC_002794.1 | + | 99821 | 0.67 | 0.918053 |
Target: 5'- gCGCCGUCgG-CCGACcugCucUUCCACa -3' miRNA: 3'- -GCGGCAGgCaGGCUGa--GuuGAGGUGc -5' |
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11070 | 3' | -56.7 | NC_002794.1 | + | 104003 | 0.67 | 0.923433 |
Target: 5'- aGCCG-CCG-CCGGCggaaCGcCUCCGCa -3' miRNA: 3'- gCGGCaGGCaGGCUGa---GUuGAGGUGc -5' |
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11070 | 3' | -56.7 | NC_002794.1 | + | 145812 | 0.67 | 0.925523 |
Target: 5'- aCGCCG-CCG-CCGGCggcgagccgagcgcgUCGACggucgCCACGc -3' miRNA: 3'- -GCGGCaGGCaGGCUG---------------AGUUGa----GGUGC- -5' |
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11070 | 3' | -56.7 | NC_002794.1 | + | 184739 | 0.67 | 0.923433 |
Target: 5'- aCGCCagGUCCGcgCCGGuC-CAGCguUCCACGg -3' miRNA: 3'- -GCGG--CAGGCa-GGCU-GaGUUG--AGGUGC- -5' |
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11070 | 3' | -56.7 | NC_002794.1 | + | 152430 | 0.67 | 0.906632 |
Target: 5'- gGCCGUCUGUCgGcaGCUgGGCUaCGCGu -3' miRNA: 3'- gCGGCAGGCAGgC--UGAgUUGAgGUGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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