miRNA display CGI


Results 41 - 60 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11070 3' -56.7 NC_002794.1 + 152430 0.67 0.906632
Target:  5'- gGCCGUCUGUCgGcaGCUgGGCUaCGCGu -3'
miRNA:   3'- gCGGCAGGCAGgC--UGAgUUGAgGUGC- -5'
11070 3' -56.7 NC_002794.1 + 150774 0.67 0.912452
Target:  5'- uCGUCGU-CGUCgGGCUCGugcgACUCCAgGc -3'
miRNA:   3'- -GCGGCAgGCAGgCUGAGU----UGAGGUgC- -5'
11070 3' -56.7 NC_002794.1 + 183458 0.67 0.923433
Target:  5'- cCGCCGgcgcCCGcCCGcCgCGAgUCCGCGg -3'
miRNA:   3'- -GCGGCa---GGCaGGCuGaGUUgAGGUGC- -5'
11070 3' -56.7 NC_002794.1 + 184739 0.67 0.923433
Target:  5'- aCGCCagGUCCGcgCCGGuC-CAGCguUCCACGg -3'
miRNA:   3'- -GCGG--CAGGCa-GGCU-GaGUUG--AGGUGC- -5'
11070 3' -56.7 NC_002794.1 + 145812 0.67 0.925523
Target:  5'- aCGCCG-CCG-CCGGCggcgagccgagcgcgUCGACggucgCCACGc -3'
miRNA:   3'- -GCGGCaGGCaGGCUG---------------AGUUGa----GGUGC- -5'
11070 3' -56.7 NC_002794.1 + 104003 0.67 0.923433
Target:  5'- aGCCG-CCG-CCGGCggaaCGcCUCCGCa -3'
miRNA:   3'- gCGGCaGGCaGGCUGa---GUuGAGGUGc -5'
11070 3' -56.7 NC_002794.1 + 99821 0.67 0.918053
Target:  5'- gCGCCGUCgG-CCGACcugCucUUCCACa -3'
miRNA:   3'- -GCGGCAGgCaGGCUGa--GuuGAGGUGc -5'
11070 3' -56.7 NC_002794.1 + 91638 0.67 0.918053
Target:  5'- gCGCCGcCUGUCCGAgCUgaAGCUgCACc -3'
miRNA:   3'- -GCGGCaGGCAGGCU-GAg-UUGAgGUGc -5'
11070 3' -56.7 NC_002794.1 + 84730 0.67 0.918053
Target:  5'- uCGCCc-CCGaCCGACggCAACgCCACGa -3'
miRNA:   3'- -GCGGcaGGCaGGCUGa-GUUGaGGUGC- -5'
11070 3' -56.7 NC_002794.1 + 69833 0.67 0.918053
Target:  5'- cCGCCcgGUCCG-CUGGCUCAccGCcUCGCGa -3'
miRNA:   3'- -GCGG--CAGGCaGGCUGAGU--UGaGGUGC- -5'
11070 3' -56.7 NC_002794.1 + 46209 0.68 0.874319
Target:  5'- uCGCCG-CCGuUCCGGC-CAGCUCguCc -3'
miRNA:   3'- -GCGGCaGGC-AGGCUGaGUUGAGguGc -5'
11070 3' -56.7 NC_002794.1 + 180026 0.68 0.874319
Target:  5'- gGCCGcggCCGUCCGAC-CcGCaUCACGu -3'
miRNA:   3'- gCGGCa--GGCAGGCUGaGuUGaGGUGC- -5'
11070 3' -56.7 NC_002794.1 + 137385 0.68 0.874319
Target:  5'- gCGCCGacgcggguccggUCUGUCCGGCgUCcGCggacgCCGCGg -3'
miRNA:   3'- -GCGGC------------AGGCAGGCUG-AGuUGa----GGUGC- -5'
11070 3' -56.7 NC_002794.1 + 60076 0.68 0.887874
Target:  5'- uGCCG-CCGcCCG-CgCAgguGCUCCACGg -3'
miRNA:   3'- gCGGCaGGCaGGCuGaGU---UGAGGUGC- -5'
11070 3' -56.7 NC_002794.1 + 89733 0.68 0.881199
Target:  5'- gCGgCGUCgGUCCuuggggauucgcGGCgauuggCAGCUCCGCGa -3'
miRNA:   3'- -GCgGCAGgCAGG------------CUGa-----GUUGAGGUGC- -5'
11070 3' -56.7 NC_002794.1 + 34088 0.68 0.887874
Target:  5'- gGCCGggcagCCGUCgGGCggcccggaccgCGACgUCCGCGa -3'
miRNA:   3'- gCGGCa----GGCAGgCUGa----------GUUG-AGGUGC- -5'
11070 3' -56.7 NC_002794.1 + 47950 0.68 0.887874
Target:  5'- cCGCgCGUcCCGgcgCCGGCUgGGCgaccgCCGCGc -3'
miRNA:   3'- -GCG-GCA-GGCa--GGCUGAgUUGa----GGUGC- -5'
11070 3' -56.7 NC_002794.1 + 66846 0.68 0.887874
Target:  5'- gCGCCG-CCGU-CGGCgCGGCgaggCCGCGg -3'
miRNA:   3'- -GCGGCaGGCAgGCUGaGUUGa---GGUGC- -5'
11070 3' -56.7 NC_002794.1 + 76473 0.68 0.887874
Target:  5'- -aCCGUCCG-CCGGCccggccgCAGCUCCGa- -3'
miRNA:   3'- gcGGCAGGCaGGCUGa------GUUGAGGUgc -5'
11070 3' -56.7 NC_002794.1 + 72922 0.68 0.867238
Target:  5'- cCGCCG-CCGUCgGAgcCGGCgUCCGCGc -3'
miRNA:   3'- -GCGGCaGGCAGgCUgaGUUG-AGGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.