miRNA display CGI


Results 1 - 20 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11070 3' -56.7 NC_002794.1 + 28721 0.77 0.402614
Target:  5'- uCGCCG-CCGUCCGAC-CGugUCCcCGa -3'
miRNA:   3'- -GCGGCaGGCAGGCUGaGUugAGGuGC- -5'
11070 3' -56.7 NC_002794.1 + 146020 0.77 0.410911
Target:  5'- aCGCCGUCCcaGUCCG-CUCGAuCUCCGgGa -3'
miRNA:   3'- -GCGGCAGG--CAGGCuGAGUU-GAGGUgC- -5'
11070 3' -56.7 NC_002794.1 + 116898 0.77 0.419312
Target:  5'- gCGCCGUCUccggcggccgGUCCGGCgUCGGCUCCgGCGu -3'
miRNA:   3'- -GCGGCAGG----------CAGGCUG-AGUUGAGG-UGC- -5'
11070 3' -56.7 NC_002794.1 + 40610 0.77 0.419312
Target:  5'- uCGCCGg-CGUCCGACUCcgcgGAgUCCGCGa -3'
miRNA:   3'- -GCGGCagGCAGGCUGAG----UUgAGGUGC- -5'
11070 3' -56.7 NC_002794.1 + 66295 0.76 0.471808
Target:  5'- gCGcCCGUCCGUCCGccCUCG-CUUCGCGa -3'
miRNA:   3'- -GC-GGCAGGCAGGCu-GAGUuGAGGUGC- -5'
11070 3' -56.7 NC_002794.1 + 29200 0.74 0.536948
Target:  5'- aGuCCGUCCGUCCGGCggUCGGCggCCGuCGg -3'
miRNA:   3'- gC-GGCAGGCAGGCUG--AGUUGa-GGU-GC- -5'
11070 3' -56.7 NC_002794.1 + 138415 0.74 0.546525
Target:  5'- uCGCCGgCCG-CCGACUCGuCgagCCGCGg -3'
miRNA:   3'- -GCGGCaGGCaGGCUGAGUuGa--GGUGC- -5'
11070 3' -56.7 NC_002794.1 + 146394 0.74 0.556155
Target:  5'- aCGCuCGUCCGUCCGAUcgUCcGC-CCGCa -3'
miRNA:   3'- -GCG-GCAGGCAGGCUG--AGuUGaGGUGc -5'
11070 3' -56.7 NC_002794.1 + 156708 0.74 0.575557
Target:  5'- cCGCCGUCCcaCCGAUcggUCGuuCUCCGCGg -3'
miRNA:   3'- -GCGGCAGGcaGGCUG---AGUu-GAGGUGC- -5'
11070 3' -56.7 NC_002794.1 + 110221 0.73 0.595107
Target:  5'- gGaCGUCCGUCCGGaUCGAgucCUCCGCGg -3'
miRNA:   3'- gCgGCAGGCAGGCUgAGUU---GAGGUGC- -5'
11070 3' -56.7 NC_002794.1 + 48286 0.73 0.603941
Target:  5'- cCGCCGUCCGaaggagcUCgaGGCUCGAgUCCACc -3'
miRNA:   3'- -GCGGCAGGC-------AGg-CUGAGUUgAGGUGc -5'
11070 3' -56.7 NC_002794.1 + 82928 0.73 0.634457
Target:  5'- cCGCCGUcgCCGcUCCGACUCcaGGCccgCCGCGc -3'
miRNA:   3'- -GCGGCA--GGC-AGGCUGAG--UUGa--GGUGC- -5'
11070 3' -56.7 NC_002794.1 + 61826 0.73 0.634457
Target:  5'- gGCCG-CCGgcggCCGGCgUCAcuccGCUCCGCGc -3'
miRNA:   3'- gCGGCaGGCa---GGCUG-AGU----UGAGGUGC- -5'
11070 3' -56.7 NC_002794.1 + 72818 0.73 0.643323
Target:  5'- cCGUCGcCCGUCCGACggaCGGCagaccacccgagaUCCGCGg -3'
miRNA:   3'- -GCGGCaGGCAGGCUGa--GUUG-------------AGGUGC- -5'
11070 3' -56.7 NC_002794.1 + 116646 0.72 0.65415
Target:  5'- gGCCcggCCGUCCGGCUCuugaggcgcuGCUCgGCGa -3'
miRNA:   3'- gCGGca-GGCAGGCUGAGu---------UGAGgUGC- -5'
11070 3' -56.7 NC_002794.1 + 190743 0.72 0.663975
Target:  5'- cCGCCG-CCGUCuCGACgggggCGGCggCCGCGc -3'
miRNA:   3'- -GCGGCaGGCAG-GCUGa----GUUGa-GGUGC- -5'
11070 3' -56.7 NC_002794.1 + 90505 0.72 0.673777
Target:  5'- gGCCGUCCccgCCGcgcgcuucggcGCUCGuCUCCGCGg -3'
miRNA:   3'- gCGGCAGGca-GGC-----------UGAGUuGAGGUGC- -5'
11070 3' -56.7 NC_002794.1 + 106827 0.72 0.673777
Target:  5'- gCGUCGUCCGgcgCuCGGCcugCGGCUCCGCc -3'
miRNA:   3'- -GCGGCAGGCa--G-GCUGa--GUUGAGGUGc -5'
11070 3' -56.7 NC_002794.1 + 14375 0.72 0.673777
Target:  5'- uGCUGUCgGUCCGAgUCAACgucUCC-CGa -3'
miRNA:   3'- gCGGCAGgCAGGCUgAGUUG---AGGuGC- -5'
11070 3' -56.7 NC_002794.1 + 48100 0.72 0.693278
Target:  5'- uCGCCGg-CGUCaGGCUCGAgUCCAUGg -3'
miRNA:   3'- -GCGGCagGCAGgCUGAGUUgAGGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.