miRNA display CGI


Results 21 - 40 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11070 3' -56.7 NC_002794.1 + 193389 0.71 0.702961
Target:  5'- uCGCCGU-CGUCCGccucgcGCUCGcCUCCGCc -3'
miRNA:   3'- -GCGGCAgGCAGGC------UGAGUuGAGGUGc -5'
11070 3' -56.7 NC_002794.1 + 65736 0.71 0.702961
Target:  5'- uGCCGUCCGgccUCCGACg--GCcCCGCGc -3'
miRNA:   3'- gCGGCAGGC---AGGCUGaguUGaGGUGC- -5'
11070 3' -56.7 NC_002794.1 + 62752 0.71 0.722153
Target:  5'- gGCCGUCuCGcUCCGGCUCcGGCUguuucgCCGCGc -3'
miRNA:   3'- gCGGCAG-GC-AGGCUGAG-UUGA------GGUGC- -5'
11070 3' -56.7 NC_002794.1 + 72859 0.71 0.722153
Target:  5'- gGCUcUCCGUCuCGcCUCGACUCCuCGg -3'
miRNA:   3'- gCGGcAGGCAG-GCuGAGUUGAGGuGC- -5'
11070 3' -56.7 NC_002794.1 + 82748 0.71 0.722153
Target:  5'- cCGCCGccaccgCCG-CgGACUCG-CUCCGCGa -3'
miRNA:   3'- -GCGGCa-----GGCaGgCUGAGUuGAGGUGC- -5'
11070 3' -56.7 NC_002794.1 + 105520 0.71 0.728807
Target:  5'- gCGCCGUCCGaagcggacgugagaUCCGGCggCGGCUCgGgCGa -3'
miRNA:   3'- -GCGGCAGGC--------------AGGCUGa-GUUGAGgU-GC- -5'
11070 3' -56.7 NC_002794.1 + 77961 0.71 0.731646
Target:  5'- cCGCCGUcgCCGagCCGACUC--CUCCGCc -3'
miRNA:   3'- -GCGGCA--GGCa-GGCUGAGuuGAGGUGc -5'
11070 3' -56.7 NC_002794.1 + 24112 0.71 0.750385
Target:  5'- gCGaCCGaUCGUCCGACUCcACacccgUCCGCGa -3'
miRNA:   3'- -GC-GGCaGGCAGGCUGAGuUG-----AGGUGC- -5'
11070 3' -56.7 NC_002794.1 + 115067 0.71 0.750385
Target:  5'- gCGCCGUCCaGUCCacGGcCUCGGCggCCGCc -3'
miRNA:   3'- -GCGGCAGG-CAGG--CU-GAGUUGa-GGUGc -5'
11070 3' -56.7 NC_002794.1 + 8270 0.71 0.750385
Target:  5'- -cUCGUCCuccuccucGUCCGACUCcAGCUCCgACGa -3'
miRNA:   3'- gcGGCAGG--------CAGGCUGAG-UUGAGG-UGC- -5'
11070 3' -56.7 NC_002794.1 + 76959 0.71 0.750385
Target:  5'- aCGCCGUCCGgCCGGCcCGccgaGCUCgACc -3'
miRNA:   3'- -GCGGCAGGCaGGCUGaGU----UGAGgUGc -5'
11070 3' -56.7 NC_002794.1 + 124038 0.71 0.750385
Target:  5'- gGCCGUCUGUCUGAagauggCGAaccgCCACGg -3'
miRNA:   3'- gCGGCAGGCAGGCUga----GUUga--GGUGC- -5'
11070 3' -56.7 NC_002794.1 + 148598 0.7 0.759613
Target:  5'- gGCCG-CCGUCCacgGACUCGGCcCUGCa -3'
miRNA:   3'- gCGGCaGGCAGG---CUGAGUUGaGGUGc -5'
11070 3' -56.7 NC_002794.1 + 53969 0.7 0.768737
Target:  5'- gCGuCCGcUCCGUCCGGCU--GCcCCGCGc -3'
miRNA:   3'- -GC-GGC-AGGCAGGCUGAguUGaGGUGC- -5'
11070 3' -56.7 NC_002794.1 + 193289 0.7 0.768737
Target:  5'- gCGCCGguagucgCCGUCCG-CUCcGCgCCGCa -3'
miRNA:   3'- -GCGGCa------GGCAGGCuGAGuUGaGGUGc -5'
11070 3' -56.7 NC_002794.1 + 187447 0.7 0.777749
Target:  5'- gCGCCGUCUG-CCGccGCUCGgcgucGCUCgGCGc -3'
miRNA:   3'- -GCGGCAGGCaGGC--UGAGU-----UGAGgUGC- -5'
11070 3' -56.7 NC_002794.1 + 23589 0.7 0.777749
Target:  5'- cCGCCGauccaccgaUCCG-CCGACcCGACcCCGCGg -3'
miRNA:   3'- -GCGGC---------AGGCaGGCUGaGUUGaGGUGC- -5'
11070 3' -56.7 NC_002794.1 + 14662 0.7 0.777749
Target:  5'- gCGgCGUCgGUCCGACUCGcgGCggcggUCGCGc -3'
miRNA:   3'- -GCgGCAGgCAGGCUGAGU--UGa----GGUGC- -5'
11070 3' -56.7 NC_002794.1 + 161580 0.7 0.786639
Target:  5'- aGCCGUCggucuCGUCUGAUUCGACUgCGgGu -3'
miRNA:   3'- gCGGCAG-----GCAGGCUGAGUUGAgGUgC- -5'
11070 3' -56.7 NC_002794.1 + 120453 0.7 0.786639
Target:  5'- aCGCCGcgUCgGcCUGGCUCGAUUUCGCGc -3'
miRNA:   3'- -GCGGC--AGgCaGGCUGAGUUGAGGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.