Results 41 - 60 of 123 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
11070 | 3' | -56.7 | NC_002794.1 | + | 46611 | 0.7 | 0.786639 |
Target: 5'- cCGCCGUCCGcgCCGGgCUgGACgagaUCACGu -3' miRNA: 3'- -GCGGCAGGCa-GGCU-GAgUUGa---GGUGC- -5' |
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11070 | 3' | -56.7 | NC_002794.1 | + | 68378 | 0.7 | 0.786639 |
Target: 5'- aCGCCGcCCc-CCGAC-CuGCUCCGCGa -3' miRNA: 3'- -GCGGCaGGcaGGCUGaGuUGAGGUGC- -5' |
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11070 | 3' | -56.7 | NC_002794.1 | + | 190112 | 0.7 | 0.804026 |
Target: 5'- cCGCCGUCCGcgCCGAagCGG-UCCGCGc -3' miRNA: 3'- -GCGGCAGGCa-GGCUgaGUUgAGGUGC- -5' |
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11070 | 3' | -56.7 | NC_002794.1 | + | 180732 | 0.7 | 0.804026 |
Target: 5'- aCGCgCGgacgacgCCGUCCGGCUC--CUCgGCGg -3' miRNA: 3'- -GCG-GCa------GGCAGGCUGAGuuGAGgUGC- -5' |
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11070 | 3' | -56.7 | NC_002794.1 | + | 23993 | 0.69 | 0.820836 |
Target: 5'- cCGUCGcUCCGUCCGACgggCcGCcgucaCCGCGg -3' miRNA: 3'- -GCGGC-AGGCAGGCUGa--GuUGa----GGUGC- -5' |
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11070 | 3' | -56.7 | NC_002794.1 | + | 21382 | 0.69 | 0.820836 |
Target: 5'- gGCCG-CCGUCUcuuccucgGACaccgcCGGCUCCACGa -3' miRNA: 3'- gCGGCaGGCAGG--------CUGa----GUUGAGGUGC- -5' |
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11070 | 3' | -56.7 | NC_002794.1 | + | 23497 | 0.69 | 0.829006 |
Target: 5'- gCGCCG-CCGUcucCCGGC-CAACgggCCACu -3' miRNA: 3'- -GCGGCaGGCA---GGCUGaGUUGa--GGUGc -5' |
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11070 | 3' | -56.7 | NC_002794.1 | + | 81142 | 0.69 | 0.829006 |
Target: 5'- gGCCGcUCCaUCCGGCUCccCUUCAUGu -3' miRNA: 3'- gCGGC-AGGcAGGCUGAGuuGAGGUGC- -5' |
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11070 | 3' | -56.7 | NC_002794.1 | + | 111118 | 0.69 | 0.829006 |
Target: 5'- gGCCGUCgaCGgcgCCGGCggccgguGCUCCACGc -3' miRNA: 3'- gCGGCAG--GCa--GGCUGagu----UGAGGUGC- -5' |
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11070 | 3' | -56.7 | NC_002794.1 | + | 124418 | 0.69 | 0.83701 |
Target: 5'- gCGCCGUCCG-CCGcgguCUCu-CUcCCGCGc -3' miRNA: 3'- -GCGGCAGGCaGGCu---GAGuuGA-GGUGC- -5' |
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11070 | 3' | -56.7 | NC_002794.1 | + | 18624 | 0.69 | 0.83701 |
Target: 5'- gGCCGcCCcUCCGACgcccGCUCCGCc -3' miRNA: 3'- gCGGCaGGcAGGCUGagu-UGAGGUGc -5' |
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11070 | 3' | -56.7 | NC_002794.1 | + | 156216 | 0.69 | 0.83701 |
Target: 5'- gGCCGgcgacUCCG-CCGGCg--GCUCCGCGc -3' miRNA: 3'- gCGGC-----AGGCaGGCUGaguUGAGGUGC- -5' |
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11070 | 3' | -56.7 | NC_002794.1 | + | 133743 | 0.69 | 0.837801 |
Target: 5'- uGCCGUUCGgucgccugcagggucCCGACUCGACcgCuCGCGa -3' miRNA: 3'- gCGGCAGGCa--------------GGCUGAGUUGa-G-GUGC- -5' |
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11070 | 3' | -56.7 | NC_002794.1 | + | 178863 | 0.69 | 0.844841 |
Target: 5'- aGCCGcCCGcccuUCCGACUCGAUagguacUCACGg -3' miRNA: 3'- gCGGCaGGC----AGGCUGAGUUGa-----GGUGC- -5' |
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11070 | 3' | -56.7 | NC_002794.1 | + | 99771 | 0.68 | 0.852494 |
Target: 5'- cCGCCGcCCGcggugCCGGCgUCGACUacgagcgcgcgCCGCGg -3' miRNA: 3'- -GCGGCaGGCa----GGCUG-AGUUGA-----------GGUGC- -5' |
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11070 | 3' | -56.7 | NC_002794.1 | + | 137133 | 0.68 | 0.852494 |
Target: 5'- uGUCGUCCGUCCGcccGCcCGGCcggCCGCc -3' miRNA: 3'- gCGGCAGGCAGGC---UGaGUUGa--GGUGc -5' |
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11070 | 3' | -56.7 | NC_002794.1 | + | 134103 | 0.68 | 0.857741 |
Target: 5'- uGCCGgacgacggacccccUCCGUCCGACggcgCGGCgagCGCGg -3' miRNA: 3'- gCGGC--------------AGGCAGGCUGa---GUUGag-GUGC- -5' |
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11070 | 3' | -56.7 | NC_002794.1 | + | 84771 | 0.68 | 0.859962 |
Target: 5'- gGCCGUCCGaggcCCGGCcCGGCUCUc-- -3' miRNA: 3'- gCGGCAGGCa---GGCUGaGUUGAGGugc -5' |
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11070 | 3' | -56.7 | NC_002794.1 | + | 71750 | 0.68 | 0.859962 |
Target: 5'- gGCCG-CCG-CCGGCUCuuccGACcggUCCGCGc -3' miRNA: 3'- gCGGCaGGCaGGCUGAG----UUG---AGGUGC- -5' |
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11070 | 3' | -56.7 | NC_002794.1 | + | 113262 | 0.68 | 0.867238 |
Target: 5'- aGCgCGUCCGcCCG-CUCGgccaGCUcCCGCGu -3' miRNA: 3'- gCG-GCAGGCaGGCuGAGU----UGA-GGUGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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