miRNA display CGI


Results 21 - 40 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11070 3' -56.7 NC_002794.1 + 91538 0.66 0.928591
Target:  5'- uCG-CGUCCGUCUauUUCGAUUCCGCc -3'
miRNA:   3'- -GCgGCAGGCAGGcuGAGUUGAGGUGc -5'
11070 3' -56.7 NC_002794.1 + 50727 0.66 0.928591
Target:  5'- uCGCCGcCCGgggcggCCGcCUCGACUCgCuCGu -3'
miRNA:   3'- -GCGGCaGGCa-----GGCuGAGUUGAG-GuGC- -5'
11070 3' -56.7 NC_002794.1 + 49166 0.66 0.928591
Target:  5'- gGCCGUCCGggaggCCGA----GC-CCACGg -3'
miRNA:   3'- gCGGCAGGCa----GGCUgaguUGaGGUGC- -5'
11070 3' -56.7 NC_002794.1 + 117698 0.66 0.928591
Target:  5'- uCGCaCG-CCGcgaCGGCguggCAGCUCCGCGu -3'
miRNA:   3'- -GCG-GCaGGCag-GCUGa---GUUGAGGUGC- -5'
11070 3' -56.7 NC_002794.1 + 37696 0.66 0.928591
Target:  5'- gCGCCGUCuucuCGUCCGcCUucuccucgCGAC-CCGCGa -3'
miRNA:   3'- -GCGGCAG----GCAGGCuGA--------GUUGaGGUGC- -5'
11070 3' -56.7 NC_002794.1 + 84819 0.66 0.928591
Target:  5'- aCGCCGUCCcUCC---UCAcCUCCGCu -3'
miRNA:   3'- -GCGGCAGGcAGGcugAGUuGAGGUGc -5'
11070 3' -56.7 NC_002794.1 + 37940 0.66 0.928591
Target:  5'- gGCCGcCCGUgCCucggcGACUC-GCUCgGCGg -3'
miRNA:   3'- gCGGCaGGCA-GG-----CUGAGuUGAGgUGC- -5'
11070 3' -56.7 NC_002794.1 + 101554 0.66 0.928591
Target:  5'- aCGCCGuUCCGaacgCCGGCgggagugcCGGCcgCCGCGg -3'
miRNA:   3'- -GCGGC-AGGCa---GGCUGa-------GUUGa-GGUGC- -5'
11070 3' -56.7 NC_002794.1 + 182631 0.66 0.928591
Target:  5'- cCGCCGUCCagcgCCGuCUCcugGGCUCgCACc -3'
miRNA:   3'- -GCGGCAGGca--GGCuGAG---UUGAG-GUGc -5'
11070 3' -56.7 NC_002794.1 + 188567 0.66 0.928591
Target:  5'- uGCCG-CaCGUgCCGACaCAacgcccgccGCUCCACGg -3'
miRNA:   3'- gCGGCaG-GCA-GGCUGaGU---------UGAGGUGC- -5'
11070 3' -56.7 NC_002794.1 + 107273 0.66 0.928086
Target:  5'- gCGCCGUCCG-CCGcCgUCGccccgucgucgacGCUCCucGCGg -3'
miRNA:   3'- -GCGGCAGGCaGGCuG-AGU-------------UGAGG--UGC- -5'
11070 3' -56.7 NC_002794.1 + 145812 0.67 0.925523
Target:  5'- aCGCCG-CCG-CCGGCggcgagccgagcgcgUCGACggucgCCACGc -3'
miRNA:   3'- -GCGGCaGGCaGGCUG---------------AGUUGa----GGUGC- -5'
11070 3' -56.7 NC_002794.1 + 184739 0.67 0.923433
Target:  5'- aCGCCagGUCCGcgCCGGuC-CAGCguUCCACGg -3'
miRNA:   3'- -GCGG--CAGGCa-GGCU-GaGUUG--AGGUGC- -5'
11070 3' -56.7 NC_002794.1 + 183458 0.67 0.923433
Target:  5'- cCGCCGgcgcCCGcCCGcCgCGAgUCCGCGg -3'
miRNA:   3'- -GCGGCa---GGCaGGCuGaGUUgAGGUGC- -5'
11070 3' -56.7 NC_002794.1 + 104003 0.67 0.923433
Target:  5'- aGCCG-CCG-CCGGCggaaCGcCUCCGCa -3'
miRNA:   3'- gCGGCaGGCaGGCUGa---GUuGAGGUGc -5'
11070 3' -56.7 NC_002794.1 + 99821 0.67 0.918053
Target:  5'- gCGCCGUCgG-CCGACcugCucUUCCACa -3'
miRNA:   3'- -GCGGCAGgCaGGCUGa--GuuGAGGUGc -5'
11070 3' -56.7 NC_002794.1 + 91638 0.67 0.918053
Target:  5'- gCGCCGcCUGUCCGAgCUgaAGCUgCACc -3'
miRNA:   3'- -GCGGCaGGCAGGCU-GAg-UUGAgGUGc -5'
11070 3' -56.7 NC_002794.1 + 84730 0.67 0.918053
Target:  5'- uCGCCc-CCGaCCGACggCAACgCCACGa -3'
miRNA:   3'- -GCGGcaGGCaGGCUGa-GUUGaGGUGC- -5'
11070 3' -56.7 NC_002794.1 + 69833 0.67 0.918053
Target:  5'- cCGCCcgGUCCG-CUGGCUCAccGCcUCGCGa -3'
miRNA:   3'- -GCGG--CAGGCaGGCUGAGU--UGaGGUGC- -5'
11070 3' -56.7 NC_002794.1 + 150774 0.67 0.912452
Target:  5'- uCGUCGU-CGUCgGGCUCGugcgACUCCAgGc -3'
miRNA:   3'- -GCGGCAgGCAGgCUGAGU----UGAGGUgC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.