miRNA display CGI


Results 41 - 60 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11070 3' -56.7 NC_002794.1 + 145427 0.67 0.912452
Target:  5'- gCGCCG-CCGU-CGGCUCAcgaGCU-CGCGa -3'
miRNA:   3'- -GCGGCaGGCAgGCUGAGU---UGAgGUGC- -5'
11070 3' -56.7 NC_002794.1 + 152430 0.67 0.906632
Target:  5'- gGCCGUCUGUCgGcaGCUgGGCUaCGCGu -3'
miRNA:   3'- gCGGCAGGCAGgC--UGAgUUGAgGUGC- -5'
11070 3' -56.7 NC_002794.1 + 115310 0.67 0.906632
Target:  5'- gCGCCG-CCGUCCGcACggucg-CCGCGg -3'
miRNA:   3'- -GCGGCaGGCAGGC-UGaguugaGGUGC- -5'
11070 3' -56.7 NC_002794.1 + 75664 0.67 0.903035
Target:  5'- gCGCCGUCCGccgcuacacgcucgCCGACUaCAACgucUCCucGCGc -3'
miRNA:   3'- -GCGGCAGGCa-------------GGCUGA-GUUG---AGG--UGC- -5'
11070 3' -56.7 NC_002794.1 + 69027 0.67 0.900594
Target:  5'- aCGCCGgcgCCcucgCCGGCUUccucGCUCCGCu -3'
miRNA:   3'- -GCGGCa--GGca--GGCUGAGu---UGAGGUGc -5'
11070 3' -56.7 NC_002794.1 + 107318 0.67 0.900594
Target:  5'- gCGCCGUCCG-CgCGGUUCGGCUUCGg- -3'
miRNA:   3'- -GCGGCAGGCaG-GCUGAGUUGAGGUgc -5'
11070 3' -56.7 NC_002794.1 + 100044 0.67 0.900594
Target:  5'- aCGaCCGcCUGUaCCGGCUCAGCgaCACGc -3'
miRNA:   3'- -GC-GGCaGGCA-GGCUGAGUUGagGUGC- -5'
11070 3' -56.7 NC_002794.1 + 188348 0.67 0.89434
Target:  5'- gCGCCGUcgcgcCCGUCCGGC-CGGCggcggCCGa- -3'
miRNA:   3'- -GCGGCA-----GGCAGGCUGaGUUGa----GGUgc -5'
11070 3' -56.7 NC_002794.1 + 49964 0.67 0.89434
Target:  5'- uCGCCgGUCgCGUCaCGAUUUAAUUCCGa- -3'
miRNA:   3'- -GCGG-CAG-GCAG-GCUGAGUUGAGGUgc -5'
11070 3' -56.7 NC_002794.1 + 180922 0.67 0.893703
Target:  5'- uCGCCGgcgCCGUCgGAggucgguCUCGcgUCCGCGg -3'
miRNA:   3'- -GCGGCa--GGCAGgCU-------GAGUugAGGUGC- -5'
11070 3' -56.7 NC_002794.1 + 60076 0.68 0.887874
Target:  5'- uGCCG-CCGcCCG-CgCAgguGCUCCACGg -3'
miRNA:   3'- gCGGCaGGCaGGCuGaGU---UGAGGUGC- -5'
11070 3' -56.7 NC_002794.1 + 34088 0.68 0.887874
Target:  5'- gGCCGggcagCCGUCgGGCggcccggaccgCGACgUCCGCGa -3'
miRNA:   3'- gCGGCa----GGCAGgCUGa----------GUUG-AGGUGC- -5'
11070 3' -56.7 NC_002794.1 + 47950 0.68 0.887874
Target:  5'- cCGCgCGUcCCGgcgCCGGCUgGGCgaccgCCGCGc -3'
miRNA:   3'- -GCG-GCA-GGCa--GGCUGAgUUGa----GGUGC- -5'
11070 3' -56.7 NC_002794.1 + 66846 0.68 0.887874
Target:  5'- gCGCCG-CCGU-CGGCgCGGCgaggCCGCGg -3'
miRNA:   3'- -GCGGCaGGCAgGCUGaGUUGa---GGUGC- -5'
11070 3' -56.7 NC_002794.1 + 76473 0.68 0.887874
Target:  5'- -aCCGUCCG-CCGGCccggccgCAGCUCCGa- -3'
miRNA:   3'- gcGGCAGGCaGGCUGa------GUUGAGGUgc -5'
11070 3' -56.7 NC_002794.1 + 126342 0.68 0.887874
Target:  5'- cCGCCGUCUucguGUcCCGGCUCcGAUUUCGCc -3'
miRNA:   3'- -GCGGCAGG----CA-GGCUGAG-UUGAGGUGc -5'
11070 3' -56.7 NC_002794.1 + 89733 0.68 0.881199
Target:  5'- gCGgCGUCgGUCCuuggggauucgcGGCgauuggCAGCUCCGCGa -3'
miRNA:   3'- -GCgGCAGgCAGG------------CUGa-----GUUGAGGUGC- -5'
11070 3' -56.7 NC_002794.1 + 137385 0.68 0.874319
Target:  5'- gCGCCGacgcggguccggUCUGUCCGGCgUCcGCggacgCCGCGg -3'
miRNA:   3'- -GCGGC------------AGGCAGGCUG-AGuUGa----GGUGC- -5'
11070 3' -56.7 NC_002794.1 + 180026 0.68 0.874319
Target:  5'- gGCCGcggCCGUCCGAC-CcGCaUCACGu -3'
miRNA:   3'- gCGGCa--GGCAGGCUGaGuUGaGGUGC- -5'
11070 3' -56.7 NC_002794.1 + 46209 0.68 0.874319
Target:  5'- uCGCCG-CCGuUCCGGC-CAGCUCguCc -3'
miRNA:   3'- -GCGGCaGGC-AGGCUGaGUUGAGguGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.