miRNA display CGI


Results 61 - 80 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11070 3' -56.7 NC_002794.1 + 180026 0.68 0.874319
Target:  5'- gGCCGcggCCGUCCGAC-CcGCaUCACGu -3'
miRNA:   3'- gCGGCa--GGCAGGCUGaGuUGaGGUGC- -5'
11070 3' -56.7 NC_002794.1 + 137385 0.68 0.874319
Target:  5'- gCGCCGacgcggguccggUCUGUCCGGCgUCcGCggacgCCGCGg -3'
miRNA:   3'- -GCGGC------------AGGCAGGCUG-AGuUGa----GGUGC- -5'
11070 3' -56.7 NC_002794.1 + 72922 0.68 0.867238
Target:  5'- cCGCCG-CCGUCgGAgcCGGCgUCCGCGc -3'
miRNA:   3'- -GCGGCaGGCAGgCUgaGUUG-AGGUGC- -5'
11070 3' -56.7 NC_002794.1 + 113262 0.68 0.867238
Target:  5'- aGCgCGUCCGcCCG-CUCGgccaGCUcCCGCGu -3'
miRNA:   3'- gCG-GCAGGCaGGCuGAGU----UGA-GGUGC- -5'
11070 3' -56.7 NC_002794.1 + 84771 0.68 0.859962
Target:  5'- gGCCGUCCGaggcCCGGCcCGGCUCUc-- -3'
miRNA:   3'- gCGGCAGGCa---GGCUGaGUUGAGGugc -5'
11070 3' -56.7 NC_002794.1 + 71750 0.68 0.859962
Target:  5'- gGCCG-CCG-CCGGCUCuuccGACcggUCCGCGc -3'
miRNA:   3'- gCGGCaGGCaGGCUGAG----UUG---AGGUGC- -5'
11070 3' -56.7 NC_002794.1 + 134103 0.68 0.857741
Target:  5'- uGCCGgacgacggacccccUCCGUCCGACggcgCGGCgagCGCGg -3'
miRNA:   3'- gCGGC--------------AGGCAGGCUGa---GUUGag-GUGC- -5'
11070 3' -56.7 NC_002794.1 + 137133 0.68 0.852494
Target:  5'- uGUCGUCCGUCCGcccGCcCGGCcggCCGCc -3'
miRNA:   3'- gCGGCAGGCAGGC---UGaGUUGa--GGUGc -5'
11070 3' -56.7 NC_002794.1 + 99771 0.68 0.852494
Target:  5'- cCGCCGcCCGcggugCCGGCgUCGACUacgagcgcgcgCCGCGg -3'
miRNA:   3'- -GCGGCaGGCa----GGCUG-AGUUGA-----------GGUGC- -5'
11070 3' -56.7 NC_002794.1 + 178863 0.69 0.844841
Target:  5'- aGCCGcCCGcccuUCCGACUCGAUagguacUCACGg -3'
miRNA:   3'- gCGGCaGGC----AGGCUGAGUUGa-----GGUGC- -5'
11070 3' -56.7 NC_002794.1 + 133743 0.69 0.837801
Target:  5'- uGCCGUUCGgucgccugcagggucCCGACUCGACcgCuCGCGa -3'
miRNA:   3'- gCGGCAGGCa--------------GGCUGAGUUGa-G-GUGC- -5'
11070 3' -56.7 NC_002794.1 + 18624 0.69 0.83701
Target:  5'- gGCCGcCCcUCCGACgcccGCUCCGCc -3'
miRNA:   3'- gCGGCaGGcAGGCUGagu-UGAGGUGc -5'
11070 3' -56.7 NC_002794.1 + 156216 0.69 0.83701
Target:  5'- gGCCGgcgacUCCG-CCGGCg--GCUCCGCGc -3'
miRNA:   3'- gCGGC-----AGGCaGGCUGaguUGAGGUGC- -5'
11070 3' -56.7 NC_002794.1 + 124418 0.69 0.83701
Target:  5'- gCGCCGUCCG-CCGcgguCUCu-CUcCCGCGc -3'
miRNA:   3'- -GCGGCAGGCaGGCu---GAGuuGA-GGUGC- -5'
11070 3' -56.7 NC_002794.1 + 111118 0.69 0.829006
Target:  5'- gGCCGUCgaCGgcgCCGGCggccgguGCUCCACGc -3'
miRNA:   3'- gCGGCAG--GCa--GGCUGagu----UGAGGUGC- -5'
11070 3' -56.7 NC_002794.1 + 81142 0.69 0.829006
Target:  5'- gGCCGcUCCaUCCGGCUCccCUUCAUGu -3'
miRNA:   3'- gCGGC-AGGcAGGCUGAGuuGAGGUGC- -5'
11070 3' -56.7 NC_002794.1 + 23497 0.69 0.829006
Target:  5'- gCGCCG-CCGUcucCCGGC-CAACgggCCACu -3'
miRNA:   3'- -GCGGCaGGCA---GGCUGaGUUGa--GGUGc -5'
11070 3' -56.7 NC_002794.1 + 23993 0.69 0.820836
Target:  5'- cCGUCGcUCCGUCCGACgggCcGCcgucaCCGCGg -3'
miRNA:   3'- -GCGGC-AGGCAGGCUGa--GuUGa----GGUGC- -5'
11070 3' -56.7 NC_002794.1 + 21382 0.69 0.820836
Target:  5'- gGCCG-CCGUCUcuuccucgGACaccgcCGGCUCCACGa -3'
miRNA:   3'- gCGGCaGGCAGG--------CUGa----GUUGAGGUGC- -5'
11070 3' -56.7 NC_002794.1 + 180732 0.7 0.804026
Target:  5'- aCGCgCGgacgacgCCGUCCGGCUC--CUCgGCGg -3'
miRNA:   3'- -GCG-GCa------GGCAGGCUGAGuuGAGgUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.