miRNA display CGI


Results 1 - 20 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11070 3' -56.7 NC_002794.1 + 8270 0.71 0.750385
Target:  5'- -cUCGUCCuccuccucGUCCGACUCcAGCUCCgACGa -3'
miRNA:   3'- gcGGCAGG--------CAGGCUGAG-UUGAGG-UGC- -5'
11070 3' -56.7 NC_002794.1 + 14375 0.72 0.673777
Target:  5'- uGCUGUCgGUCCGAgUCAACgucUCC-CGa -3'
miRNA:   3'- gCGGCAGgCAGGCUgAGUUG---AGGuGC- -5'
11070 3' -56.7 NC_002794.1 + 14662 0.7 0.777749
Target:  5'- gCGgCGUCgGUCCGACUCGcgGCggcggUCGCGc -3'
miRNA:   3'- -GCgGCAGgCAGGCUGAGU--UGa----GGUGC- -5'
11070 3' -56.7 NC_002794.1 + 16714 0.66 0.928591
Target:  5'- uCGCCGUCCGaggagUCUGcGC-CGGCUCCGu- -3'
miRNA:   3'- -GCGGCAGGC-----AGGC-UGaGUUGAGGUgc -5'
11070 3' -56.7 NC_002794.1 + 18624 0.69 0.83701
Target:  5'- gGCCGcCCcUCCGACgcccGCUCCGCc -3'
miRNA:   3'- gCGGCaGGcAGGCUGagu-UGAGGUGc -5'
11070 3' -56.7 NC_002794.1 + 21382 0.69 0.820836
Target:  5'- gGCCG-CCGUCUcuuccucgGACaccgcCGGCUCCACGa -3'
miRNA:   3'- gCGGCaGGCAGG--------CUGa----GUUGAGGUGC- -5'
11070 3' -56.7 NC_002794.1 + 21684 0.68 0.874319
Target:  5'- uCGcCCGcUCCGgcuccCCGcCUCGGCgUCCACGg -3'
miRNA:   3'- -GC-GGC-AGGCa----GGCuGAGUUG-AGGUGC- -5'
11070 3' -56.7 NC_002794.1 + 23497 0.69 0.829006
Target:  5'- gCGCCG-CCGUcucCCGGC-CAACgggCCACu -3'
miRNA:   3'- -GCGGCaGGCA---GGCUGaGUUGa--GGUGc -5'
11070 3' -56.7 NC_002794.1 + 23589 0.7 0.777749
Target:  5'- cCGCCGauccaccgaUCCG-CCGACcCGACcCCGCGg -3'
miRNA:   3'- -GCGGC---------AGGCaGGCUGaGUUGaGGUGC- -5'
11070 3' -56.7 NC_002794.1 + 23993 0.69 0.820836
Target:  5'- cCGUCGcUCCGUCCGACgggCcGCcgucaCCGCGg -3'
miRNA:   3'- -GCGGC-AGGCAGGCUGa--GuUGa----GGUGC- -5'
11070 3' -56.7 NC_002794.1 + 24112 0.71 0.750385
Target:  5'- gCGaCCGaUCGUCCGACUCcACacccgUCCGCGa -3'
miRNA:   3'- -GC-GGCaGGCAGGCUGAGuUG-----AGGUGC- -5'
11070 3' -56.7 NC_002794.1 + 28721 0.77 0.402614
Target:  5'- uCGCCG-CCGUCCGAC-CGugUCCcCGa -3'
miRNA:   3'- -GCGGCaGGCAGGCUGaGUugAGGuGC- -5'
11070 3' -56.7 NC_002794.1 + 29200 0.74 0.536948
Target:  5'- aGuCCGUCCGUCCGGCggUCGGCggCCGuCGg -3'
miRNA:   3'- gC-GGCAGGCAGGCUG--AGUUGa-GGU-GC- -5'
11070 3' -56.7 NC_002794.1 + 34088 0.68 0.887874
Target:  5'- gGCCGggcagCCGUCgGGCggcccggaccgCGACgUCCGCGa -3'
miRNA:   3'- gCGGCa----GGCAGgCUGa----------GUUG-AGGUGC- -5'
11070 3' -56.7 NC_002794.1 + 37696 0.66 0.928591
Target:  5'- gCGCCGUCuucuCGUCCGcCUucuccucgCGAC-CCGCGa -3'
miRNA:   3'- -GCGGCAG----GCAGGCuGA--------GUUGaGGUGC- -5'
11070 3' -56.7 NC_002794.1 + 37940 0.66 0.928591
Target:  5'- gGCCGcCCGUgCCucggcGACUC-GCUCgGCGg -3'
miRNA:   3'- gCGGCaGGCA-GG-----CUGAGuUGAGgUGC- -5'
11070 3' -56.7 NC_002794.1 + 40610 0.77 0.419312
Target:  5'- uCGCCGg-CGUCCGACUCcgcgGAgUCCGCGa -3'
miRNA:   3'- -GCGGCagGCAGGCUGAG----UUgAGGUGC- -5'
11070 3' -56.7 NC_002794.1 + 44419 0.66 0.947017
Target:  5'- gGCCGgcgCCGagCGGCUCGACgacaCCGgCGc -3'
miRNA:   3'- gCGGCa--GGCagGCUGAGUUGa---GGU-GC- -5'
11070 3' -56.7 NC_002794.1 + 46209 0.68 0.874319
Target:  5'- uCGCCG-CCGuUCCGGC-CAGCUCguCc -3'
miRNA:   3'- -GCGGCaGGC-AGGCUGaGUUGAGguGc -5'
11070 3' -56.7 NC_002794.1 + 46611 0.7 0.786639
Target:  5'- cCGCCGUCCGcgCCGGgCUgGACgagaUCACGu -3'
miRNA:   3'- -GCGGCAGGCa-GGCU-GAgUUGa---GGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.