miRNA display CGI


Results 21 - 40 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11070 3' -56.7 NC_002794.1 + 47950 0.68 0.887874
Target:  5'- cCGCgCGUcCCGgcgCCGGCUgGGCgaccgCCGCGc -3'
miRNA:   3'- -GCG-GCA-GGCa--GGCUGAgUUGa----GGUGC- -5'
11070 3' -56.7 NC_002794.1 + 48100 0.72 0.693278
Target:  5'- uCGCCGg-CGUCaGGCUCGAgUCCAUGg -3'
miRNA:   3'- -GCGGCagGCAGgCUGAGUUgAGGUGC- -5'
11070 3' -56.7 NC_002794.1 + 48286 0.73 0.603941
Target:  5'- cCGCCGUCCGaaggagcUCgaGGCUCGAgUCCACc -3'
miRNA:   3'- -GCGGCAGGC-------AGg-CUGAGUUgAGGUGc -5'
11070 3' -56.7 NC_002794.1 + 49025 0.66 0.9423
Target:  5'- gGCCGcggcgUCGUCCGGCgcggucgUCAGCgUCCAgGg -3'
miRNA:   3'- gCGGCa----GGCAGGCUG-------AGUUG-AGGUgC- -5'
11070 3' -56.7 NC_002794.1 + 49166 0.66 0.928591
Target:  5'- gGCCGUCCGggaggCCGA----GC-CCACGg -3'
miRNA:   3'- gCGGCAGGCa----GGCUgaguUGaGGUGC- -5'
11070 3' -56.7 NC_002794.1 + 49964 0.67 0.89434
Target:  5'- uCGCCgGUCgCGUCaCGAUUUAAUUCCGa- -3'
miRNA:   3'- -GCGG-CAG-GCAG-GCUGAGUUGAGGUgc -5'
11070 3' -56.7 NC_002794.1 + 50727 0.66 0.928591
Target:  5'- uCGCCGcCCGgggcggCCGcCUCGACUCgCuCGu -3'
miRNA:   3'- -GCGGCaGGCa-----GGCuGAGUUGAG-GuGC- -5'
11070 3' -56.7 NC_002794.1 + 53366 0.66 0.947017
Target:  5'- cCGCCGgguccCCGUCgagCGACUCGAa--CACGu -3'
miRNA:   3'- -GCGGCa----GGCAG---GCUGAGUUgagGUGC- -5'
11070 3' -56.7 NC_002794.1 + 53969 0.7 0.768737
Target:  5'- gCGuCCGcUCCGUCCGGCU--GCcCCGCGc -3'
miRNA:   3'- -GC-GGC-AGGCAGGCUGAguUGaGGUGC- -5'
11070 3' -56.7 NC_002794.1 + 60076 0.68 0.887874
Target:  5'- uGCCG-CCGcCCG-CgCAgguGCUCCACGg -3'
miRNA:   3'- gCGGCaGGCaGGCuGaGU---UGAGGUGC- -5'
11070 3' -56.7 NC_002794.1 + 61826 0.73 0.634457
Target:  5'- gGCCG-CCGgcggCCGGCgUCAcuccGCUCCGCGc -3'
miRNA:   3'- gCGGCaGGCa---GGCUG-AGU----UGAGGUGC- -5'
11070 3' -56.7 NC_002794.1 + 62752 0.71 0.722153
Target:  5'- gGCCGUCuCGcUCCGGCUCcGGCUguuucgCCGCGc -3'
miRNA:   3'- gCGGCAG-GC-AGGCUGAG-UUGA------GGUGC- -5'
11070 3' -56.7 NC_002794.1 + 63926 0.66 0.938244
Target:  5'- cCGCCGcCCGgCCGGCgagucUCGAgUCCgACGc -3'
miRNA:   3'- -GCGGCaGGCaGGCUG-----AGUUgAGG-UGC- -5'
11070 3' -56.7 NC_002794.1 + 65736 0.71 0.702961
Target:  5'- uGCCGUCCGgccUCCGACg--GCcCCGCGc -3'
miRNA:   3'- gCGGCAGGC---AGGCUGaguUGaGGUGC- -5'
11070 3' -56.7 NC_002794.1 + 66295 0.76 0.471808
Target:  5'- gCGcCCGUCCGUCCGccCUCG-CUUCGCGa -3'
miRNA:   3'- -GC-GGCAGGCAGGCu-GAGUuGAGGUGC- -5'
11070 3' -56.7 NC_002794.1 + 66846 0.68 0.887874
Target:  5'- gCGCCG-CCGU-CGGCgCGGCgaggCCGCGg -3'
miRNA:   3'- -GCGGCaGGCAgGCUGaGUUGa---GGUGC- -5'
11070 3' -56.7 NC_002794.1 + 67224 0.66 0.938244
Target:  5'- gCGCCGggCGgcuaaCCGcguCUCGAUUCCGCGc -3'
miRNA:   3'- -GCGGCagGCa----GGCu--GAGUUGAGGUGC- -5'
11070 3' -56.7 NC_002794.1 + 68378 0.7 0.786639
Target:  5'- aCGCCGcCCc-CCGAC-CuGCUCCGCGa -3'
miRNA:   3'- -GCGGCaGGcaGGCUGaGuUGAGGUGC- -5'
11070 3' -56.7 NC_002794.1 + 69027 0.67 0.900594
Target:  5'- aCGCCGgcgCCcucgCCGGCUUccucGCUCCGCu -3'
miRNA:   3'- -GCGGCa--GGca--GGCUGAGu---UGAGGUGc -5'
11070 3' -56.7 NC_002794.1 + 69833 0.67 0.918053
Target:  5'- cCGCCcgGUCCG-CUGGCUCAccGCcUCGCGa -3'
miRNA:   3'- -GCGG--CAGGCaGGCUGAGU--UGaGGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.