miRNA display CGI


Results 41 - 60 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11070 3' -56.7 NC_002794.1 + 71750 0.68 0.859962
Target:  5'- gGCCG-CCG-CCGGCUCuuccGACcggUCCGCGc -3'
miRNA:   3'- gCGGCaGGCaGGCUGAG----UUG---AGGUGC- -5'
11070 3' -56.7 NC_002794.1 + 72818 0.73 0.643323
Target:  5'- cCGUCGcCCGUCCGACggaCGGCagaccacccgagaUCCGCGg -3'
miRNA:   3'- -GCGGCaGGCAGGCUGa--GUUG-------------AGGUGC- -5'
11070 3' -56.7 NC_002794.1 + 72859 0.71 0.722153
Target:  5'- gGCUcUCCGUCuCGcCUCGACUCCuCGg -3'
miRNA:   3'- gCGGcAGGCAG-GCuGAGUUGAGGuGC- -5'
11070 3' -56.7 NC_002794.1 + 72922 0.68 0.867238
Target:  5'- cCGCCG-CCGUCgGAgcCGGCgUCCGCGc -3'
miRNA:   3'- -GCGGCaGGCAGgCUgaGUUG-AGGUGC- -5'
11070 3' -56.7 NC_002794.1 + 75664 0.67 0.903035
Target:  5'- gCGCCGUCCGccgcuacacgcucgCCGACUaCAACgucUCCucGCGc -3'
miRNA:   3'- -GCGGCAGGCa-------------GGCUGA-GUUG---AGG--UGC- -5'
11070 3' -56.7 NC_002794.1 + 76473 0.68 0.887874
Target:  5'- -aCCGUCCG-CCGGCccggccgCAGCUCCGa- -3'
miRNA:   3'- gcGGCAGGCaGGCUGa------GUUGAGGUgc -5'
11070 3' -56.7 NC_002794.1 + 76959 0.71 0.750385
Target:  5'- aCGCCGUCCGgCCGGCcCGccgaGCUCgACc -3'
miRNA:   3'- -GCGGCAGGCaGGCUGaGU----UGAGgUGc -5'
11070 3' -56.7 NC_002794.1 + 77961 0.71 0.731646
Target:  5'- cCGCCGUcgCCGagCCGACUC--CUCCGCc -3'
miRNA:   3'- -GCGGCA--GGCa-GGCUGAGuuGAGGUGc -5'
11070 3' -56.7 NC_002794.1 + 81142 0.69 0.829006
Target:  5'- gGCCGcUCCaUCCGGCUCccCUUCAUGu -3'
miRNA:   3'- gCGGC-AGGcAGGCUGAGuuGAGGUGC- -5'
11070 3' -56.7 NC_002794.1 + 82748 0.71 0.722153
Target:  5'- cCGCCGccaccgCCG-CgGACUCG-CUCCGCGa -3'
miRNA:   3'- -GCGGCa-----GGCaGgCUGAGUuGAGGUGC- -5'
11070 3' -56.7 NC_002794.1 + 82928 0.73 0.634457
Target:  5'- cCGCCGUcgCCGcUCCGACUCcaGGCccgCCGCGc -3'
miRNA:   3'- -GCGGCA--GGC-AGGCUGAG--UUGa--GGUGC- -5'
11070 3' -56.7 NC_002794.1 + 83706 0.66 0.938244
Target:  5'- gGCC-UCUGccagaUCCGACUCAagacGCUCCuCGa -3'
miRNA:   3'- gCGGcAGGC-----AGGCUGAGU----UGAGGuGC- -5'
11070 3' -56.7 NC_002794.1 + 84730 0.67 0.918053
Target:  5'- uCGCCc-CCGaCCGACggCAACgCCACGa -3'
miRNA:   3'- -GCGGcaGGCaGGCUGa-GUUGaGGUGC- -5'
11070 3' -56.7 NC_002794.1 + 84771 0.68 0.859962
Target:  5'- gGCCGUCCGaggcCCGGCcCGGCUCUc-- -3'
miRNA:   3'- gCGGCAGGCa---GGCUGaGUUGAGGugc -5'
11070 3' -56.7 NC_002794.1 + 84819 0.66 0.928591
Target:  5'- aCGCCGUCCcUCC---UCAcCUCCGCu -3'
miRNA:   3'- -GCGGCAGGcAGGcugAGUuGAGGUGc -5'
11070 3' -56.7 NC_002794.1 + 89733 0.68 0.881199
Target:  5'- gCGgCGUCgGUCCuuggggauucgcGGCgauuggCAGCUCCGCGa -3'
miRNA:   3'- -GCgGCAGgCAGG------------CUGa-----GUUGAGGUGC- -5'
11070 3' -56.7 NC_002794.1 + 90505 0.72 0.673777
Target:  5'- gGCCGUCCccgCCGcgcgcuucggcGCUCGuCUCCGCGg -3'
miRNA:   3'- gCGGCAGGca-GGC-----------UGAGUuGAGGUGC- -5'
11070 3' -56.7 NC_002794.1 + 91538 0.66 0.928591
Target:  5'- uCG-CGUCCGUCUauUUCGAUUCCGCc -3'
miRNA:   3'- -GCgGCAGGCAGGcuGAGUUGAGGUGc -5'
11070 3' -56.7 NC_002794.1 + 91638 0.67 0.918053
Target:  5'- gCGCCGcCUGUCCGAgCUgaAGCUgCACc -3'
miRNA:   3'- -GCGGCaGGCAGGCU-GAg-UUGAgGUGc -5'
11070 3' -56.7 NC_002794.1 + 99771 0.68 0.852494
Target:  5'- cCGCCGcCCGcggugCCGGCgUCGACUacgagcgcgcgCCGCGg -3'
miRNA:   3'- -GCGGCaGGCa----GGCUG-AGUUGA-----------GGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.