miRNA display CGI


Results 1 - 20 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11070 3' -56.7 NC_002794.1 + 193429 0.66 0.933529
Target:  5'- cCGUCGUccagCCGUCCGGCacgCcGC-CCACGc -3'
miRNA:   3'- -GCGGCA----GGCAGGCUGa--GuUGaGGUGC- -5'
11070 3' -56.7 NC_002794.1 + 193389 0.71 0.702961
Target:  5'- uCGCCGU-CGUCCGccucgcGCUCGcCUCCGCc -3'
miRNA:   3'- -GCGGCAgGCAGGC------UGAGUuGAGGUGc -5'
11070 3' -56.7 NC_002794.1 + 193289 0.7 0.768737
Target:  5'- gCGCCGguagucgCCGUCCG-CUCcGCgCCGCa -3'
miRNA:   3'- -GCGGCa------GGCAGGCuGAGuUGaGGUGc -5'
11070 3' -56.7 NC_002794.1 + 192476 0.66 0.94274
Target:  5'- gCGCCGagcccUCGUCCGcCUCGuC-CCACGg -3'
miRNA:   3'- -GCGGCa----GGCAGGCuGAGUuGaGGUGC- -5'
11070 3' -56.7 NC_002794.1 + 190743 0.72 0.663975
Target:  5'- cCGCCG-CCGUCuCGACgggggCGGCggCCGCGc -3'
miRNA:   3'- -GCGGCaGGCAG-GCUGa----GUUGa-GGUGC- -5'
11070 3' -56.7 NC_002794.1 + 190112 0.7 0.804026
Target:  5'- cCGCCGUCCGcgCCGAagCGG-UCCGCGc -3'
miRNA:   3'- -GCGGCAGGCa-GGCUgaGUUgAGGUGC- -5'
11070 3' -56.7 NC_002794.1 + 188567 0.66 0.928591
Target:  5'- uGCCG-CaCGUgCCGACaCAacgcccgccGCUCCACGg -3'
miRNA:   3'- gCGGCaG-GCA-GGCUGaGU---------UGAGGUGC- -5'
11070 3' -56.7 NC_002794.1 + 188348 0.67 0.89434
Target:  5'- gCGCCGUcgcgcCCGUCCGGC-CGGCggcggCCGa- -3'
miRNA:   3'- -GCGGCA-----GGCAGGCUGaGUUGa----GGUgc -5'
11070 3' -56.7 NC_002794.1 + 187447 0.7 0.777749
Target:  5'- gCGCCGUCUG-CCGccGCUCGgcgucGCUCgGCGc -3'
miRNA:   3'- -GCGGCAGGCaGGC--UGAGU-----UGAGgUGC- -5'
11070 3' -56.7 NC_002794.1 + 185415 0.66 0.94274
Target:  5'- cCGaCCG-CCGU-CGACUCGACgcggcgCCAUGc -3'
miRNA:   3'- -GC-GGCaGGCAgGCUGAGUUGa-----GGUGC- -5'
11070 3' -56.7 NC_002794.1 + 184739 0.67 0.923433
Target:  5'- aCGCCagGUCCGcgCCGGuC-CAGCguUCCACGg -3'
miRNA:   3'- -GCGG--CAGGCa-GGCU-GaGUUG--AGGUGC- -5'
11070 3' -56.7 NC_002794.1 + 184296 0.66 0.933529
Target:  5'- cCGCCGccuccCCGUCCcagaGCaCGGCUCCGCu -3'
miRNA:   3'- -GCGGCa----GGCAGGc---UGaGUUGAGGUGc -5'
11070 3' -56.7 NC_002794.1 + 183620 0.66 0.946599
Target:  5'- gGCCGgcgcccCCGcgcccCCGACUCGAgcagggccgccuuCUCCGCGc -3'
miRNA:   3'- gCGGCa-----GGCa----GGCUGAGUU-------------GAGGUGC- -5'
11070 3' -56.7 NC_002794.1 + 183458 0.67 0.923433
Target:  5'- cCGCCGgcgcCCGcCCGcCgCGAgUCCGCGg -3'
miRNA:   3'- -GCGGCa---GGCaGGCuGaGUUgAGGUGC- -5'
11070 3' -56.7 NC_002794.1 + 182631 0.66 0.928591
Target:  5'- cCGCCGUCCagcgCCGuCUCcugGGCUCgCACc -3'
miRNA:   3'- -GCGGCAGGca--GGCuGAG---UUGAG-GUGc -5'
11070 3' -56.7 NC_002794.1 + 180922 0.67 0.893703
Target:  5'- uCGCCGgcgCCGUCgGAggucgguCUCGcgUCCGCGg -3'
miRNA:   3'- -GCGGCa--GGCAGgCU-------GAGUugAGGUGC- -5'
11070 3' -56.7 NC_002794.1 + 180732 0.7 0.804026
Target:  5'- aCGCgCGgacgacgCCGUCCGGCUC--CUCgGCGg -3'
miRNA:   3'- -GCG-GCa------GGCAGGCUGAGuuGAGgUGC- -5'
11070 3' -56.7 NC_002794.1 + 180026 0.68 0.874319
Target:  5'- gGCCGcggCCGUCCGAC-CcGCaUCACGu -3'
miRNA:   3'- gCGGCa--GGCAGGCUGaGuUGaGGUGC- -5'
11070 3' -56.7 NC_002794.1 + 179868 0.66 0.94274
Target:  5'- uCGCCgGUCUGUCCGGCgacgggUAAUagCACa -3'
miRNA:   3'- -GCGG-CAGGCAGGCUGa-----GUUGagGUGc -5'
11070 3' -56.7 NC_002794.1 + 178863 0.69 0.844841
Target:  5'- aGCCGcCCGcccuUCCGACUCGAUagguacUCACGg -3'
miRNA:   3'- gCGGCaGGC----AGGCUGAGUUGa-----GGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.