miRNA display CGI


Results 21 - 40 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11070 3' -56.7 NC_002794.1 + 161580 0.7 0.786639
Target:  5'- aGCCGUCggucuCGUCUGAUUCGACUgCGgGu -3'
miRNA:   3'- gCGGCAG-----GCAGGCUGAGUUGAgGUgC- -5'
11070 3' -56.7 NC_002794.1 + 156708 0.74 0.575557
Target:  5'- cCGCCGUCCcaCCGAUcggUCGuuCUCCGCGg -3'
miRNA:   3'- -GCGGCAGGcaGGCUG---AGUu-GAGGUGC- -5'
11070 3' -56.7 NC_002794.1 + 156216 0.69 0.83701
Target:  5'- gGCCGgcgacUCCG-CCGGCg--GCUCCGCGc -3'
miRNA:   3'- gCGGC-----AGGCaGGCUGaguUGAGGUGC- -5'
11070 3' -56.7 NC_002794.1 + 152430 0.67 0.906632
Target:  5'- gGCCGUCUGUCgGcaGCUgGGCUaCGCGu -3'
miRNA:   3'- gCGGCAGGCAGgC--UGAgUUGAgGUGC- -5'
11070 3' -56.7 NC_002794.1 + 151917 0.66 0.938244
Target:  5'- gGCCGagcUCCGUCugCGGCgCAagcGCUCCGCc -3'
miRNA:   3'- gCGGC---AGGCAG--GCUGaGU---UGAGGUGc -5'
11070 3' -56.7 NC_002794.1 + 150774 0.67 0.912452
Target:  5'- uCGUCGU-CGUCgGGCUCGugcgACUCCAgGc -3'
miRNA:   3'- -GCGGCAgGCAGgCUGAGU----UGAGGUgC- -5'
11070 3' -56.7 NC_002794.1 + 148598 0.7 0.759613
Target:  5'- gGCCG-CCGUCCacgGACUCGGCcCUGCa -3'
miRNA:   3'- gCGGCaGGCAGG---CUGAGUUGaGGUGc -5'
11070 3' -56.7 NC_002794.1 + 147275 0.66 0.947017
Target:  5'- uGCCGUggCCGUCCGGCUgcaCGAUcaUCUuCGg -3'
miRNA:   3'- gCGGCA--GGCAGGCUGA---GUUG--AGGuGC- -5'
11070 3' -56.7 NC_002794.1 + 146991 0.68 0.874319
Target:  5'- gCGCCG-CCGgCCGACgUCGGCggCgGCGg -3'
miRNA:   3'- -GCGGCaGGCaGGCUG-AGUUGa-GgUGC- -5'
11070 3' -56.7 NC_002794.1 + 146394 0.74 0.556155
Target:  5'- aCGCuCGUCCGUCCGAUcgUCcGC-CCGCa -3'
miRNA:   3'- -GCG-GCAGGCAGGCUG--AGuUGaGGUGc -5'
11070 3' -56.7 NC_002794.1 + 146020 0.77 0.410911
Target:  5'- aCGCCGUCCcaGUCCG-CUCGAuCUCCGgGa -3'
miRNA:   3'- -GCGGCAGG--CAGGCuGAGUU-GAGGUgC- -5'
11070 3' -56.7 NC_002794.1 + 145812 0.67 0.925523
Target:  5'- aCGCCG-CCG-CCGGCggcgagccgagcgcgUCGACggucgCCACGc -3'
miRNA:   3'- -GCGGCaGGCaGGCUG---------------AGUUGa----GGUGC- -5'
11070 3' -56.7 NC_002794.1 + 145427 0.67 0.912452
Target:  5'- gCGCCG-CCGU-CGGCUCAcgaGCU-CGCGa -3'
miRNA:   3'- -GCGGCaGGCAgGCUGAGU---UGAgGUGC- -5'
11070 3' -56.7 NC_002794.1 + 138415 0.74 0.546525
Target:  5'- uCGCCGgCCG-CCGACUCGuCgagCCGCGg -3'
miRNA:   3'- -GCGGCaGGCaGGCUGAGUuGa--GGUGC- -5'
11070 3' -56.7 NC_002794.1 + 137385 0.68 0.874319
Target:  5'- gCGCCGacgcggguccggUCUGUCCGGCgUCcGCggacgCCGCGg -3'
miRNA:   3'- -GCGGC------------AGGCAGGCUG-AGuUGa----GGUGC- -5'
11070 3' -56.7 NC_002794.1 + 137133 0.68 0.852494
Target:  5'- uGUCGUCCGUCCGcccGCcCGGCcggCCGCc -3'
miRNA:   3'- gCGGCAGGCAGGC---UGaGUUGa--GGUGc -5'
11070 3' -56.7 NC_002794.1 + 134103 0.68 0.857741
Target:  5'- uGCCGgacgacggacccccUCCGUCCGACggcgCGGCgagCGCGg -3'
miRNA:   3'- gCGGC--------------AGGCAGGCUGa---GUUGag-GUGC- -5'
11070 3' -56.7 NC_002794.1 + 133743 0.69 0.837801
Target:  5'- uGCCGUUCGgucgccugcagggucCCGACUCGACcgCuCGCGa -3'
miRNA:   3'- gCGGCAGGCa--------------GGCUGAGUUGa-G-GUGC- -5'
11070 3' -56.7 NC_002794.1 + 130652 0.66 0.938244
Target:  5'- cCGCCGccccgCCG-CCGGC-CGcggGCUCCGCc -3'
miRNA:   3'- -GCGGCa----GGCaGGCUGaGU---UGAGGUGc -5'
11070 3' -56.7 NC_002794.1 + 128763 0.66 0.938244
Target:  5'- aGCgGUCCGgucagggCCGGgUgGACUCC-CGa -3'
miRNA:   3'- gCGgCAGGCa------GGCUgAgUUGAGGuGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.