miRNA display CGI


Results 41 - 60 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11070 3' -56.7 NC_002794.1 + 185415 0.66 0.94274
Target:  5'- cCGaCCG-CCGU-CGACUCGACgcggcgCCAUGc -3'
miRNA:   3'- -GC-GGCaGGCAgGCUGAGUUGa-----GGUGC- -5'
11070 3' -56.7 NC_002794.1 + 44419 0.66 0.947017
Target:  5'- gGCCGgcgCCGagCGGCUCGACgacaCCGgCGc -3'
miRNA:   3'- gCGGCa--GGCagGCUGAGUUGa---GGU-GC- -5'
11070 3' -56.7 NC_002794.1 + 183620 0.66 0.946599
Target:  5'- gGCCGgcgcccCCGcgcccCCGACUCGAgcagggccgccuuCUCCGCGc -3'
miRNA:   3'- gCGGCa-----GGCa----GGCUGAGUU-------------GAGGUGC- -5'
11070 3' -56.7 NC_002794.1 + 53366 0.66 0.947017
Target:  5'- cCGCCGgguccCCGUCgagCGACUCGAa--CACGu -3'
miRNA:   3'- -GCGGCa----GGCAG---GCUGAGUUgagGUGC- -5'
11070 3' -56.7 NC_002794.1 + 147275 0.66 0.947017
Target:  5'- uGCCGUggCCGUCCGGCUgcaCGAUcaUCUuCGg -3'
miRNA:   3'- gCGGCA--GGCAGGCUGA---GUUG--AGGuGC- -5'
11070 3' -56.7 NC_002794.1 + 63926 0.66 0.938244
Target:  5'- cCGCCGcCCGgCCGGCgagucUCGAgUCCgACGc -3'
miRNA:   3'- -GCGGCaGGCaGGCUG-----AGUUgAGG-UGC- -5'
11070 3' -56.7 NC_002794.1 + 128763 0.66 0.938244
Target:  5'- aGCgGUCCGgucagggCCGGgUgGACUCC-CGa -3'
miRNA:   3'- gCGgCAGGCa------GGCUgAgUUGAGGuGC- -5'
11070 3' -56.7 NC_002794.1 + 50727 0.66 0.928591
Target:  5'- uCGCCGcCCGgggcggCCGcCUCGACUCgCuCGu -3'
miRNA:   3'- -GCGGCaGGCa-----GGCuGAGUUGAG-GuGC- -5'
11070 3' -56.7 NC_002794.1 + 91538 0.66 0.928591
Target:  5'- uCG-CGUCCGUCUauUUCGAUUCCGCc -3'
miRNA:   3'- -GCgGCAGGCAGGcuGAGUUGAGGUGc -5'
11070 3' -56.7 NC_002794.1 + 16714 0.66 0.928591
Target:  5'- uCGCCGUCCGaggagUCUGcGC-CGGCUCCGu- -3'
miRNA:   3'- -GCGGCAGGC-----AGGC-UGaGUUGAGGUgc -5'
11070 3' -56.7 NC_002794.1 + 117698 0.66 0.928591
Target:  5'- uCGCaCG-CCGcgaCGGCguggCAGCUCCGCGu -3'
miRNA:   3'- -GCG-GCaGGCag-GCUGa---GUUGAGGUGC- -5'
11070 3' -56.7 NC_002794.1 + 37696 0.66 0.928591
Target:  5'- gCGCCGUCuucuCGUCCGcCUucuccucgCGAC-CCGCGa -3'
miRNA:   3'- -GCGGCAG----GCAGGCuGA--------GUUGaGGUGC- -5'
11070 3' -56.7 NC_002794.1 + 84819 0.66 0.928591
Target:  5'- aCGCCGUCCcUCC---UCAcCUCCGCu -3'
miRNA:   3'- -GCGGCAGGcAGGcugAGUuGAGGUGc -5'
11070 3' -56.7 NC_002794.1 + 37940 0.66 0.928591
Target:  5'- gGCCGcCCGUgCCucggcGACUC-GCUCgGCGg -3'
miRNA:   3'- gCGGCaGGCA-GG-----CUGAGuUGAGgUGC- -5'
11070 3' -56.7 NC_002794.1 + 101554 0.66 0.928591
Target:  5'- aCGCCGuUCCGaacgCCGGCgggagugcCGGCcgCCGCGg -3'
miRNA:   3'- -GCGGC-AGGCa---GGCUGa-------GUUGa-GGUGC- -5'
11070 3' -56.7 NC_002794.1 + 182631 0.66 0.928591
Target:  5'- cCGCCGUCCagcgCCGuCUCcugGGCUCgCACc -3'
miRNA:   3'- -GCGGCAGGca--GGCuGAG---UUGAG-GUGc -5'
11070 3' -56.7 NC_002794.1 + 113514 0.66 0.933529
Target:  5'- aGCCGcggagggagcUCCG-CCGGCUCGGCgUCGCc -3'
miRNA:   3'- gCGGC----------AGGCaGGCUGAGUUGaGGUGc -5'
11070 3' -56.7 NC_002794.1 + 188567 0.66 0.928591
Target:  5'- uGCCG-CaCGUgCCGACaCAacgcccgccGCUCCACGg -3'
miRNA:   3'- gCGGCaG-GCA-GGCUGaGU---------UGAGGUGC- -5'
11070 3' -56.7 NC_002794.1 + 193429 0.66 0.933529
Target:  5'- cCGUCGUccagCCGUCCGGCacgCcGC-CCACGc -3'
miRNA:   3'- -GCGGCA----GGCAGGCUGa--GuUGaGGUGC- -5'
11070 3' -56.7 NC_002794.1 + 184296 0.66 0.933529
Target:  5'- cCGCCGccuccCCGUCCcagaGCaCGGCUCCGCu -3'
miRNA:   3'- -GCGGCa----GGCAGGc---UGaGUUGAGGUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.