miRNA display CGI


Results 1 - 20 of 241 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11071 5' -59.4 NC_002794.1 + 16306 0.65 0.882616
Target:  5'- gGCGGC-CG-CGGCCGGcugGAUcccccugccccugGCCGGc -3'
miRNA:   3'- -CGCCGaGCuGCCGGCUa--CUG-------------UGGCCc -5'
11071 5' -59.4 NC_002794.1 + 66740 0.66 0.876603
Target:  5'- gGCGGUggCGGCGGCgCGuacGAcCGCUGGa -3'
miRNA:   3'- -CGCCGa-GCUGCCG-GCua-CU-GUGGCCc -5'
11071 5' -59.4 NC_002794.1 + 61823 0.66 0.876603
Target:  5'- gGCGGCcgcCGGCGGCCGgcGuCACUc-- -3'
miRNA:   3'- -CGCCGa--GCUGCCGGCuaCuGUGGccc -5'
11071 5' -59.4 NC_002794.1 + 37775 0.66 0.876603
Target:  5'- aGCGGCcgucgUCGuCGGCCGcaGGCGCCu-- -3'
miRNA:   3'- -CGCCG-----AGCuGCCGGCuaCUGUGGccc -5'
11071 5' -59.4 NC_002794.1 + 19535 0.66 0.876603
Target:  5'- cGCGGCgCGGCccGCCGGUGuCGgacCCGGa -3'
miRNA:   3'- -CGCCGaGCUGc-CGGCUACuGU---GGCCc -5'
11071 5' -59.4 NC_002794.1 + 94220 0.66 0.876603
Target:  5'- gGUGGCggCGACGGgCGGgcGgGCCGGu -3'
miRNA:   3'- -CGCCGa-GCUGCCgGCUacUgUGGCCc -5'
11071 5' -59.4 NC_002794.1 + 132117 0.66 0.874563
Target:  5'- -gGGgUgGACGGUCGGcUGGCAgguacucgcugggcCCGGGg -3'
miRNA:   3'- cgCCgAgCUGCCGGCU-ACUGU--------------GGCCC- -5'
11071 5' -59.4 NC_002794.1 + 50769 0.66 0.872506
Target:  5'- gGCGGCggCGACGGCgCGucucgggcGGCGCCuccucgcccggcgucGGGc -3'
miRNA:   3'- -CGCCGa-GCUGCCG-GCua------CUGUGG---------------CCC- -5'
11071 5' -59.4 NC_002794.1 + 21373 0.66 0.870432
Target:  5'- cGCGGC--GGCGGCCGccgucucuuccucgGACACCGccGGc -3'
miRNA:   3'- -CGCCGagCUGCCGGCua------------CUGUGGC--CC- -5'
11071 5' -59.4 NC_002794.1 + 70872 0.66 0.869737
Target:  5'- gGCGGCggcagCGGCGGCuccuCGA--GCGCCaGGu -3'
miRNA:   3'- -CGCCGa----GCUGCCG----GCUacUGUGGcCC- -5'
11071 5' -59.4 NC_002794.1 + 95021 0.66 0.869737
Target:  5'- gGCGGCUgugCGGCaucucGCCGGUGGCGgcgcCCGaGGc -3'
miRNA:   3'- -CGCCGA---GCUGc----CGGCUACUGU----GGC-CC- -5'
11071 5' -59.4 NC_002794.1 + 131386 0.66 0.869737
Target:  5'- uCGGCgccgCGcccgucaucACGGCCucgcccguGAUcGGCACCGGGc -3'
miRNA:   3'- cGCCGa---GC---------UGCCGG--------CUA-CUGUGGCCC- -5'
11071 5' -59.4 NC_002794.1 + 125015 0.66 0.869737
Target:  5'- aGCGGUccgCGGCGGCCGu---CACCa-- -3'
miRNA:   3'- -CGCCGa--GCUGCCGGCuacuGUGGccc -5'
11071 5' -59.4 NC_002794.1 + 135462 0.66 0.869737
Target:  5'- cGgGGCcCG-CGGCCGAcgacGACGCCGc- -3'
miRNA:   3'- -CgCCGaGCuGCCGGCUa---CUGUGGCcc -5'
11071 5' -59.4 NC_002794.1 + 127358 0.66 0.869737
Target:  5'- cGCGGCggCGgcGCGGCCGcucGUGuCGgCGGa -3'
miRNA:   3'- -CGCCGa-GC--UGCCGGC---UACuGUgGCCc -5'
11071 5' -59.4 NC_002794.1 + 116954 0.66 0.869737
Target:  5'- gGCGGCgUCGGCGGgCGcagGAa--CGGGc -3'
miRNA:   3'- -CGCCG-AGCUGCCgGCua-CUgugGCCC- -5'
11071 5' -59.4 NC_002794.1 + 130344 0.66 0.869737
Target:  5'- gGCGGCgaCGACGacGCCGAcGACGaCGGu -3'
miRNA:   3'- -CGCCGa-GCUGC--CGGCUaCUGUgGCCc -5'
11071 5' -59.4 NC_002794.1 + 180080 0.66 0.869737
Target:  5'- aGCGGCg-GACGGUauCGGUG-CGCaGGGc -3'
miRNA:   3'- -CGCCGagCUGCCG--GCUACuGUGgCCC- -5'
11071 5' -59.4 NC_002794.1 + 17427 0.66 0.869737
Target:  5'- cGCGGuCUCcGC-GCCGccGGCGCuCGGGc -3'
miRNA:   3'- -CGCC-GAGcUGcCGGCuaCUGUG-GCCC- -5'
11071 5' -59.4 NC_002794.1 + 193781 0.66 0.869737
Target:  5'- cGCccGCUCGAuCGcCCGAcGACGCCGGc -3'
miRNA:   3'- -CGc-CGAGCU-GCcGGCUaCUGUGGCCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.