Results 1 - 20 of 241 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11071 | 5' | -59.4 | NC_002794.1 | + | 16306 | 0.65 | 0.882616 |
Target: 5'- gGCGGC-CG-CGGCCGGcugGAUcccccugccccugGCCGGc -3' miRNA: 3'- -CGCCGaGCuGCCGGCUa--CUG-------------UGGCCc -5' |
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11071 | 5' | -59.4 | NC_002794.1 | + | 130344 | 0.66 | 0.869737 |
Target: 5'- gGCGGCgaCGACGacGCCGAcGACGaCGGu -3' miRNA: 3'- -CGCCGa-GCUGC--CGGCUaCUGUgGCCc -5' |
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11071 | 5' | -59.4 | NC_002794.1 | + | 116954 | 0.66 | 0.869737 |
Target: 5'- gGCGGCgUCGGCGGgCGcagGAa--CGGGc -3' miRNA: 3'- -CGCCG-AGCUGCCgGCua-CUgugGCCC- -5' |
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11071 | 5' | -59.4 | NC_002794.1 | + | 127358 | 0.66 | 0.869737 |
Target: 5'- cGCGGCggCGgcGCGGCCGcucGUGuCGgCGGa -3' miRNA: 3'- -CGCCGa-GC--UGCCGGC---UACuGUgGCCc -5' |
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11071 | 5' | -59.4 | NC_002794.1 | + | 135462 | 0.66 | 0.869737 |
Target: 5'- cGgGGCcCG-CGGCCGAcgacGACGCCGc- -3' miRNA: 3'- -CgCCGaGCuGCCGGCUa---CUGUGGCcc -5' |
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11071 | 5' | -59.4 | NC_002794.1 | + | 70872 | 0.66 | 0.869737 |
Target: 5'- gGCGGCggcagCGGCGGCuccuCGA--GCGCCaGGu -3' miRNA: 3'- -CGCCGa----GCUGCCG----GCUacUGUGGcCC- -5' |
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11071 | 5' | -59.4 | NC_002794.1 | + | 95021 | 0.66 | 0.869737 |
Target: 5'- gGCGGCUgugCGGCaucucGCCGGUGGCGgcgcCCGaGGc -3' miRNA: 3'- -CGCCGA---GCUGc----CGGCUACUGU----GGC-CC- -5' |
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11071 | 5' | -59.4 | NC_002794.1 | + | 131386 | 0.66 | 0.869737 |
Target: 5'- uCGGCgccgCGcccgucaucACGGCCucgcccguGAUcGGCACCGGGc -3' miRNA: 3'- cGCCGa---GC---------UGCCGG--------CUA-CUGUGGCCC- -5' |
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11071 | 5' | -59.4 | NC_002794.1 | + | 125015 | 0.66 | 0.869737 |
Target: 5'- aGCGGUccgCGGCGGCCGu---CACCa-- -3' miRNA: 3'- -CGCCGa--GCUGCCGGCuacuGUGGccc -5' |
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11071 | 5' | -59.4 | NC_002794.1 | + | 180080 | 0.66 | 0.869737 |
Target: 5'- aGCGGCg-GACGGUauCGGUG-CGCaGGGc -3' miRNA: 3'- -CGCCGagCUGCCG--GCUACuGUGgCCC- -5' |
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11071 | 5' | -59.4 | NC_002794.1 | + | 17427 | 0.66 | 0.869737 |
Target: 5'- cGCGGuCUCcGC-GCCGccGGCGCuCGGGc -3' miRNA: 3'- -CGCC-GAGcUGcCGGCuaCUGUG-GCCC- -5' |
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11071 | 5' | -59.4 | NC_002794.1 | + | 50769 | 0.66 | 0.872506 |
Target: 5'- gGCGGCggCGACGGCgCGucucgggcGGCGCCuccucgcccggcgucGGGc -3' miRNA: 3'- -CGCCGa-GCUGCCG-GCua------CUGUGG---------------CCC- -5' |
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11071 | 5' | -59.4 | NC_002794.1 | + | 19535 | 0.66 | 0.876603 |
Target: 5'- cGCGGCgCGGCccGCCGGUGuCGgacCCGGa -3' miRNA: 3'- -CGCCGaGCUGc-CGGCUACuGU---GGCCc -5' |
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11071 | 5' | -59.4 | NC_002794.1 | + | 37775 | 0.66 | 0.876603 |
Target: 5'- aGCGGCcgucgUCGuCGGCCGcaGGCGCCu-- -3' miRNA: 3'- -CGCCG-----AGCuGCCGGCuaCUGUGGccc -5' |
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11071 | 5' | -59.4 | NC_002794.1 | + | 61823 | 0.66 | 0.876603 |
Target: 5'- gGCGGCcgcCGGCGGCCGgcGuCACUc-- -3' miRNA: 3'- -CGCCGa--GCUGCCGGCuaCuGUGGccc -5' |
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11071 | 5' | -59.4 | NC_002794.1 | + | 66740 | 0.66 | 0.876603 |
Target: 5'- gGCGGUggCGGCGGCgCGuacGAcCGCUGGa -3' miRNA: 3'- -CGCCGa-GCUGCCG-GCua-CU-GUGGCCc -5' |
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11071 | 5' | -59.4 | NC_002794.1 | + | 132117 | 0.66 | 0.874563 |
Target: 5'- -gGGgUgGACGGUCGGcUGGCAgguacucgcugggcCCGGGg -3' miRNA: 3'- cgCCgAgCUGCCGGCU-ACUGU--------------GGCCC- -5' |
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11071 | 5' | -59.4 | NC_002794.1 | + | 193781 | 0.66 | 0.869737 |
Target: 5'- cGCccGCUCGAuCGcCCGAcGACGCCGGc -3' miRNA: 3'- -CGc-CGAGCU-GCcGGCUaCUGUGGCCc -5' |
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11071 | 5' | -59.4 | NC_002794.1 | + | 21373 | 0.66 | 0.870432 |
Target: 5'- cGCGGC--GGCGGCCGccgucucuuccucgGACACCGccGGc -3' miRNA: 3'- -CGCCGagCUGCCGGCua------------CUGUGGC--CC- -5' |
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11071 | 5' | -59.4 | NC_002794.1 | + | 135566 | 0.66 | 0.86904 |
Target: 5'- cGCaGGC-CGGCGaCCGAUcggaaacGuCGCCGGGg -3' miRNA: 3'- -CG-CCGaGCUGCcGGCUA-------CuGUGGCCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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