miRNA display CGI


Results 1 - 20 of 241 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11071 5' -59.4 NC_002794.1 + 95837 0.82 0.155371
Target:  5'- aGCGGCggCGGCGGCCGGggaGGCGgCGGGc -3'
miRNA:   3'- -CGCCGa-GCUGCCGGCUa--CUGUgGCCC- -5'
11071 5' -59.4 NC_002794.1 + 50578 0.8 0.206492
Target:  5'- aCGGCgugcgCGGCGGCUGGguggccGGCGCCGGGg -3'
miRNA:   3'- cGCCGa----GCUGCCGGCUa-----CUGUGGCCC- -5'
11071 5' -59.4 NC_002794.1 + 180760 0.78 0.253291
Target:  5'- gGCGGCuUCGGCGGCaacugucCGGgcgGugGCCGGGg -3'
miRNA:   3'- -CGCCG-AGCUGCCG-------GCUa--CugUGGCCC- -5'
11071 5' -59.4 NC_002794.1 + 119898 0.78 0.265534
Target:  5'- gGCGGauCUUGGCGGCCGA---CGCCGGGg -3'
miRNA:   3'- -CGCC--GAGCUGCCGGCUacuGUGGCCC- -5'
11071 5' -59.4 NC_002794.1 + 95761 0.78 0.265534
Target:  5'- cGCGGggCGGCGGCCGcgacGGCGgCCGGGg -3'
miRNA:   3'- -CGCCgaGCUGCCGGCua--CUGU-GGCCC- -5'
11071 5' -59.4 NC_002794.1 + 129159 0.78 0.27396
Target:  5'- cGCGGCccUCG-CGGCCGAUGGCcguucgaucggccuCCGGGu -3'
miRNA:   3'- -CGCCG--AGCuGCCGGCUACUGu-------------GGCCC- -5'
11071 5' -59.4 NC_002794.1 + 141430 0.78 0.277636
Target:  5'- gGCGGCgggGGC-GCCGggGGCGCCGGGa -3'
miRNA:   3'- -CGCCGag-CUGcCGGCuaCUGUGGCCC- -5'
11071 5' -59.4 NC_002794.1 + 96760 0.77 0.28385
Target:  5'- aGCGGC-CGGCGGUCGAgucGC-CCGGGg -3'
miRNA:   3'- -CGCCGaGCUGCCGGCUac-UGuGGCCC- -5'
11071 5' -59.4 NC_002794.1 + 46384 0.77 0.28385
Target:  5'- gGCGcGCUaCGACGaGCUGAaacGGCACCGGGa -3'
miRNA:   3'- -CGC-CGA-GCUGC-CGGCUa--CUGUGGCCC- -5'
11071 5' -59.4 NC_002794.1 + 37737 0.77 0.296607
Target:  5'- gGCGGCgccgccggCGGCGGCgCGgcGGCGCCGGcGg -3'
miRNA:   3'- -CGCCGa-------GCUGCCG-GCuaCUGUGGCC-C- -5'
11071 5' -59.4 NC_002794.1 + 120052 0.77 0.31657
Target:  5'- gGCGGCggUGGCGGCCGcgGAgGCCGa- -3'
miRNA:   3'- -CGCCGa-GCUGCCGGCuaCUgUGGCcc -5'
11071 5' -59.4 NC_002794.1 + 44261 0.76 0.323446
Target:  5'- gGCGGCUCGGCcGCCGGggacgGAggaguccgcgccCGCCGGGc -3'
miRNA:   3'- -CGCCGAGCUGcCGGCUa----CU------------GUGGCCC- -5'
11071 5' -59.4 NC_002794.1 + 49418 0.76 0.33753
Target:  5'- cGCGGCggCGGCGGCCGucacGGCGuCCGGc -3'
miRNA:   3'- -CGCCGa-GCUGCCGGCua--CUGU-GGCCc -5'
11071 5' -59.4 NC_002794.1 + 150255 0.76 0.33753
Target:  5'- uGCGGCUCGugccgcuCGGUCGAcUGACGCCGc- -3'
miRNA:   3'- -CGCCGAGCu------GCCGGCU-ACUGUGGCcc -5'
11071 5' -59.4 NC_002794.1 + 106349 0.76 0.33753
Target:  5'- cCGGgUCGACGGCgGGcgGGCGCCGGu -3'
miRNA:   3'- cGCCgAGCUGCCGgCUa-CUGUGGCCc -5'
11071 5' -59.4 NC_002794.1 + 104488 0.76 0.344737
Target:  5'- gGCGGCcaCGGCGGCCGGgucgGGCGagaaCGGGc -3'
miRNA:   3'- -CGCCGa-GCUGCCGGCUa---CUGUg---GCCC- -5'
11071 5' -59.4 NC_002794.1 + 154290 0.76 0.352054
Target:  5'- cGCGGCUCGACGGUCGAaucgaGCCuccucGGGa -3'
miRNA:   3'- -CGCCGAGCUGCCGGCUacug-UGG-----CCC- -5'
11071 5' -59.4 NC_002794.1 + 179918 0.76 0.352054
Target:  5'- aGCGGCUcCGACGGUuuCGAaGACgacgucgcggGCCGGGg -3'
miRNA:   3'- -CGCCGA-GCUGCCG--GCUaCUG----------UGGCCC- -5'
11071 5' -59.4 NC_002794.1 + 188364 0.76 0.359481
Target:  5'- cCGGCcggCGGCGGCCGAgGGCGuucucCCGGGc -3'
miRNA:   3'- cGCCGa--GCUGCCGGCUaCUGU-----GGCCC- -5'
11071 5' -59.4 NC_002794.1 + 142398 0.75 0.367016
Target:  5'- gGCGGUgcaGGCGGCguCGgcGGCGCCGGGc -3'
miRNA:   3'- -CGCCGag-CUGCCG--GCuaCUGUGGCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.