miRNA display CGI


Results 21 - 40 of 241 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11071 5' -59.4 NC_002794.1 + 119709 0.75 0.367016
Target:  5'- gGCGGCcacaaCGGCGGCUuc-GGCACCGGGc -3'
miRNA:   3'- -CGCCGa----GCUGCCGGcuaCUGUGGCCC- -5'
11071 5' -59.4 NC_002794.1 + 178800 0.75 0.37466
Target:  5'- gGCGGCUCGGC--CCGggGGgACCGGGc -3'
miRNA:   3'- -CGCCGAGCUGccGGCuaCUgUGGCCC- -5'
11071 5' -59.4 NC_002794.1 + 78327 0.75 0.38241
Target:  5'- cCGGCgCGACGGgCGGaGGCGCCGGa -3'
miRNA:   3'- cGCCGaGCUGCCgGCUaCUGUGGCCc -5'
11071 5' -59.4 NC_002794.1 + 37967 0.75 0.38241
Target:  5'- gGCGGCUCGugGuacgaGCCGAUcGCggucaGCCGGGc -3'
miRNA:   3'- -CGCCGAGCugC-----CGGCUAcUG-----UGGCCC- -5'
11071 5' -59.4 NC_002794.1 + 287 0.75 0.390266
Target:  5'- gGCGGCccUGGCGcGCCGA--ACGCCGGGc -3'
miRNA:   3'- -CGCCGa-GCUGC-CGGCUacUGUGGCCC- -5'
11071 5' -59.4 NC_002794.1 + 55403 0.75 0.398228
Target:  5'- gGCGGCcgaGGCGGCCGAggcGACcCCGGc -3'
miRNA:   3'- -CGCCGag-CUGCCGGCUa--CUGuGGCCc -5'
11071 5' -59.4 NC_002794.1 + 191875 0.74 0.414458
Target:  5'- gGCGGCggagggGGCGGCgGAggcgggaucGGCACCGGGa -3'
miRNA:   3'- -CGCCGag----CUGCCGgCUa--------CUGUGGCCC- -5'
11071 5' -59.4 NC_002794.1 + 147007 0.74 0.422725
Target:  5'- uCGGCggCGGCGGCCGccGGCGCuCGGu -3'
miRNA:   3'- cGCCGa-GCUGCCGGCuaCUGUG-GCCc -5'
11071 5' -59.4 NC_002794.1 + 144970 0.74 0.43109
Target:  5'- gGCGcCUCGACGGUgucgCGAccGGCGCCGGGc -3'
miRNA:   3'- -CGCcGAGCUGCCG----GCUa-CUGUGGCCC- -5'
11071 5' -59.4 NC_002794.1 + 65087 0.74 0.43109
Target:  5'- gGCGGCUCGAUGGuCCGAaGAgACCu-- -3'
miRNA:   3'- -CGCCGAGCUGCC-GGCUaCUgUGGccc -5'
11071 5' -59.4 NC_002794.1 + 150807 0.74 0.43955
Target:  5'- cGCGGCg-GACGGCCGAgc-CGCUGGa -3'
miRNA:   3'- -CGCCGagCUGCCGGCUacuGUGGCCc -5'
11071 5' -59.4 NC_002794.1 + 118064 0.74 0.43955
Target:  5'- cGCGGaa-GACGGCCGAcGACAUCuGGa -3'
miRNA:   3'- -CGCCgagCUGCCGGCUaCUGUGGcCC- -5'
11071 5' -59.4 NC_002794.1 + 134860 0.74 0.448105
Target:  5'- uUGGCUCGAUGGUCGA--GCACCGa- -3'
miRNA:   3'- cGCCGAGCUGCCGGCUacUGUGGCcc -5'
11071 5' -59.4 NC_002794.1 + 179696 0.74 0.448105
Target:  5'- gGCGGCggCGACGGUgGc-GACGCCGGcGg -3'
miRNA:   3'- -CGCCGa-GCUGCCGgCuaCUGUGGCC-C- -5'
11071 5' -59.4 NC_002794.1 + 55358 0.74 0.456751
Target:  5'- gGCGGCcgaGGCGGCCGA-GGCgGCCGaGGc -3'
miRNA:   3'- -CGCCGag-CUGCCGGCUaCUG-UGGC-CC- -5'
11071 5' -59.4 NC_002794.1 + 55305 0.74 0.456751
Target:  5'- gGCGGCgucgCGGCGGgCGcgGGCGgcuuccgaggacCCGGGg -3'
miRNA:   3'- -CGCCGa---GCUGCCgGCuaCUGU------------GGCCC- -5'
11071 5' -59.4 NC_002794.1 + 155910 0.74 0.456751
Target:  5'- cCGGCUCGACGuGCgGAgccgGGugcuugccguCACCGGGg -3'
miRNA:   3'- cGCCGAGCUGC-CGgCUa---CU----------GUGGCCC- -5'
11071 5' -59.4 NC_002794.1 + 126257 0.74 0.456751
Target:  5'- cGCGaGgUCGGCGGCUGGcuggcGGCGCUGGGc -3'
miRNA:   3'- -CGC-CgAGCUGCCGGCUa----CUGUGGCCC- -5'
11071 5' -59.4 NC_002794.1 + 115592 0.73 0.465486
Target:  5'- aGCGGCU--GCGGUCGAcccgcucgcccGGCGCCGGGa -3'
miRNA:   3'- -CGCCGAgcUGCCGGCUa----------CUGUGGCCC- -5'
11071 5' -59.4 NC_002794.1 + 116086 0.73 0.465486
Target:  5'- uCGGCgCGGCGGUCGu---CGCCGGGg -3'
miRNA:   3'- cGCCGaGCUGCCGGCuacuGUGGCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.