miRNA display CGI


Results 41 - 60 of 241 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11071 5' -59.4 NC_002794.1 + 44719 0.73 0.474307
Target:  5'- cGCGGCgaCGuCGGCCGgcGcCGCCGGa -3'
miRNA:   3'- -CGCCGa-GCuGCCGGCuaCuGUGGCCc -5'
11071 5' -59.4 NC_002794.1 + 128279 0.73 0.474307
Target:  5'- cGCGGagcCGACGGCCGucuucGACACCGa- -3'
miRNA:   3'- -CGCCga-GCUGCCGGCua---CUGUGGCcc -5'
11071 5' -59.4 NC_002794.1 + 106048 0.73 0.483211
Target:  5'- cGCGGCUgaacuucgucaaCGugGGCCGccGGCACgCGGc -3'
miRNA:   3'- -CGCCGA------------GCugCCGGCuaCUGUG-GCCc -5'
11071 5' -59.4 NC_002794.1 + 121975 0.73 0.491293
Target:  5'- uGCGGCUCGgucccgccgagcGCGGCCGGgagcuguuccacgUcgucuucuucGGCGCCGGGc -3'
miRNA:   3'- -CGCCGAGC------------UGCCGGCU-------------A----------CUGUGGCCC- -5'
11071 5' -59.4 NC_002794.1 + 12220 0.73 0.492195
Target:  5'- gGCGGCgUCGGCGgcGCCGgcGGCGCCGu- -3'
miRNA:   3'- -CGCCG-AGCUGC--CGGCuaCUGUGGCcc -5'
11071 5' -59.4 NC_002794.1 + 113533 0.73 0.492195
Target:  5'- cCGGCUCGGCGucGCCGGcccggagcaGGCGCCGGa -3'
miRNA:   3'- cGCCGAGCUGC--CGGCUa--------CUGUGGCCc -5'
11071 5' -59.4 NC_002794.1 + 140107 0.73 0.501255
Target:  5'- gGCGGCgaucgaCGGCGGUCGAcgGugGgCGGGu -3'
miRNA:   3'- -CGCCGa-----GCUGCCGGCUa-CugUgGCCC- -5'
11071 5' -59.4 NC_002794.1 + 125751 0.73 0.510387
Target:  5'- cGCGGgaCGGCGGCCGgcGGCucgccacCCGGc -3'
miRNA:   3'- -CGCCgaGCUGCCGGCuaCUGu------GGCCc -5'
11071 5' -59.4 NC_002794.1 + 112327 0.73 0.510387
Target:  5'- aCGGCggggagcgCGcCGGCCGgcGGCGCCGGcGg -3'
miRNA:   3'- cGCCGa-------GCuGCCGGCuaCUGUGGCC-C- -5'
11071 5' -59.4 NC_002794.1 + 80393 0.73 0.510387
Target:  5'- cGCGacuaccuaCUCGccGCGGCCcaGGUGGCGCCGGGc -3'
miRNA:   3'- -CGCc-------GAGC--UGCCGG--CUACUGUGGCCC- -5'
11071 5' -59.4 NC_002794.1 + 176894 0.72 0.519588
Target:  5'- -gGGCUCGAgGGgaCCGGUGGgauUGCCGGGu -3'
miRNA:   3'- cgCCGAGCUgCC--GGCUACU---GUGGCCC- -5'
11071 5' -59.4 NC_002794.1 + 151638 0.72 0.528853
Target:  5'- uUGGCUCGccgcCGGCCGGcacuUGGCucgccGCCGGGu -3'
miRNA:   3'- cGCCGAGCu---GCCGGCU----ACUG-----UGGCCC- -5'
11071 5' -59.4 NC_002794.1 + 87049 0.72 0.528853
Target:  5'- cGCGGCUCGG-GGCCGGguccuguagcGACagcacggugcagGCCGGGc -3'
miRNA:   3'- -CGCCGAGCUgCCGGCUa---------CUG------------UGGCCC- -5'
11071 5' -59.4 NC_002794.1 + 95576 0.72 0.528853
Target:  5'- aGCGGCUCuauguCGGCuCGAUcuacgcGGCGCCGGa -3'
miRNA:   3'- -CGCCGAGcu---GCCG-GCUA------CUGUGGCCc -5'
11071 5' -59.4 NC_002794.1 + 121530 0.72 0.538179
Target:  5'- gGCGGUcgucUCGACGGagcCCGGUGACGacgagacgagcuUCGGGa -3'
miRNA:   3'- -CGCCG----AGCUGCC---GGCUACUGU------------GGCCC- -5'
11071 5' -59.4 NC_002794.1 + 104413 0.72 0.547561
Target:  5'- cGCGGcCUCGGCcucGGCCGccGGC-CCGGa -3'
miRNA:   3'- -CGCC-GAGCUG---CCGGCuaCUGuGGCCc -5'
11071 5' -59.4 NC_002794.1 + 62081 0.72 0.547561
Target:  5'- gGCGGCgaCGACGGCgaCGcgGcGCGCCGGa -3'
miRNA:   3'- -CGCCGa-GCUGCCG--GCuaC-UGUGGCCc -5'
11071 5' -59.4 NC_002794.1 + 106391 0.72 0.547561
Target:  5'- aCGGCgggCGaACGGUCGGaccccggcGGCGCCGGGg -3'
miRNA:   3'- cGCCGa--GC-UGCCGGCUa-------CUGUGGCCC- -5'
11071 5' -59.4 NC_002794.1 + 182539 0.72 0.556994
Target:  5'- cGCGGCagCGacugcgccGCGGCCGGcaccGuCACCGGGa -3'
miRNA:   3'- -CGCCGa-GC--------UGCCGGCUa---CuGUGGCCC- -5'
11071 5' -59.4 NC_002794.1 + 115933 0.72 0.556994
Target:  5'- gGCGGCgggcCGGCccGCCGcGUGuCGCCGGGg -3'
miRNA:   3'- -CGCCGa---GCUGc-CGGC-UACuGUGGCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.