miRNA display CGI


Results 21 - 40 of 241 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11071 5' -59.4 NC_002794.1 + 34847 0.66 0.869737
Target:  5'- aGCgGGCgUCGgaGCGggcGCCGcgGGCGCCGcGGa -3'
miRNA:   3'- -CG-CCG-AGC--UGC---CGGCuaCUGUGGC-CC- -5'
11071 5' -59.4 NC_002794.1 + 53051 0.66 0.86904
Target:  5'- cGCGGCUccagcguaggcagCGcCGcGCCGccagcucgcGGCACCGGGc -3'
miRNA:   3'- -CGCCGA-------------GCuGC-CGGCua-------CUGUGGCCC- -5'
11071 5' -59.4 NC_002794.1 + 135566 0.66 0.86904
Target:  5'- cGCaGGC-CGGCGaCCGAUcggaaacGuCGCCGGGg -3'
miRNA:   3'- -CG-CCGaGCUGCcGGCUA-------CuGUGGCCC- -5'
11071 5' -59.4 NC_002794.1 + 147111 0.66 0.865526
Target:  5'- cCGGCccaaggacgaagacgUCGACGGCgguuCGAgacGGCcCCGGGg -3'
miRNA:   3'- cGCCG---------------AGCUGCCG----GCUa--CUGuGGCCC- -5'
11071 5' -59.4 NC_002794.1 + 142150 0.66 0.862682
Target:  5'- aCGGCggaGGCGG-CGGUaGCACCGGc -3'
miRNA:   3'- cGCCGag-CUGCCgGCUAcUGUGGCCc -5'
11071 5' -59.4 NC_002794.1 + 137392 0.66 0.862682
Target:  5'- cGCGGgUccggucugucCGGCGuCCGcgGACGCCGcGGa -3'
miRNA:   3'- -CGCCgA----------GCUGCcGGCuaCUGUGGC-CC- -5'
11071 5' -59.4 NC_002794.1 + 63686 0.66 0.860529
Target:  5'- cGCGGCgaCGACGaugacgacgacggcGCCGgcGcCGCCGGa -3'
miRNA:   3'- -CGCCGa-GCUGC--------------CGGCuaCuGUGGCCc -5'
11071 5' -59.4 NC_002794.1 + 31669 0.66 0.855442
Target:  5'- aGCGuuugacCUCGGCGuGCgaGAUGAacaGCCGGGu -3'
miRNA:   3'- -CGCc-----GAGCUGC-CGg-CUACUg--UGGCCC- -5'
11071 5' -59.4 NC_002794.1 + 119514 0.66 0.855442
Target:  5'- gGCGGCgCGGagcCGGCCGcgGACcccucguCCGcGGc -3'
miRNA:   3'- -CGCCGaGCU---GCCGGCuaCUGu------GGC-CC- -5'
11071 5' -59.4 NC_002794.1 + 116227 0.66 0.855442
Target:  5'- cGCGGCUCGA--GUCGAUGccCGCCGu- -3'
miRNA:   3'- -CGCCGAGCUgcCGGCUACu-GUGGCcc -5'
11071 5' -59.4 NC_002794.1 + 9350 0.66 0.855442
Target:  5'- cCGGCaCGACGGUCGAaGG--UCGGGg -3'
miRNA:   3'- cGCCGaGCUGCCGGCUaCUguGGCCC- -5'
11071 5' -59.4 NC_002794.1 + 128531 0.66 0.855442
Target:  5'- cUGGCUCugGACGGUCGGguGCGCCGu- -3'
miRNA:   3'- cGCCGAG--CUGCCGGCUacUGUGGCcc -5'
11071 5' -59.4 NC_002794.1 + 122666 0.66 0.855442
Target:  5'- gGCGGCgcaggccCGGCuGuGCCGGUcgcgccaGCGCCGGGc -3'
miRNA:   3'- -CGCCGa------GCUG-C-CGGCUAc------UGUGGCCC- -5'
11071 5' -59.4 NC_002794.1 + 32854 0.66 0.848023
Target:  5'- aGCGGCa--GCGGCCGAgccggcgGGCGgCGGcGg -3'
miRNA:   3'- -CGCCGagcUGCCGGCUa------CUGUgGCC-C- -5'
11071 5' -59.4 NC_002794.1 + 110431 0.66 0.848023
Target:  5'- gGCGGCugucgUCGuCGGUgGcgGAgGCCGGc -3'
miRNA:   3'- -CGCCG-----AGCuGCCGgCuaCUgUGGCCc -5'
11071 5' -59.4 NC_002794.1 + 181577 0.66 0.848023
Target:  5'- -aGGaUCGACaGGCUGcgGGCcgcgACCGGGu -3'
miRNA:   3'- cgCCgAGCUG-CCGGCuaCUG----UGGCCC- -5'
11071 5' -59.4 NC_002794.1 + 114639 0.66 0.848023
Target:  5'- cGCGgaGCUCGAgCuGCCGGUGcuguucgcgcgcGCGCCGGu -3'
miRNA:   3'- -CGC--CGAGCU-GcCGGCUAC------------UGUGGCCc -5'
11071 5' -59.4 NC_002794.1 + 110074 0.66 0.848023
Target:  5'- cGCGGaUCG-CGGUCGugaGACGuuGGGu -3'
miRNA:   3'- -CGCCgAGCuGCCGGCua-CUGUggCCC- -5'
11071 5' -59.4 NC_002794.1 + 68751 0.66 0.847271
Target:  5'- -aGGC-CGACugagccgGGCCGccggGGCGCCGGa -3'
miRNA:   3'- cgCCGaGCUG-------CCGGCua--CUGUGGCCc -5'
11071 5' -59.4 NC_002794.1 + 120088 0.66 0.847271
Target:  5'- gGCGGCgaCGAcCGuGCCGAgcgcgccgcgcgUGACgcgcgcgacggcgACCGGGg -3'
miRNA:   3'- -CGCCGa-GCU-GC-CGGCU------------ACUG-------------UGGCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.