miRNA display CGI


Results 41 - 60 of 241 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11071 5' -59.4 NC_002794.1 + 86995 0.66 0.845763
Target:  5'- gGCGGCuuUCGGCGGCgUGGguuccGGCGaggguccgcaggauCCGGGg -3'
miRNA:   3'- -CGCCG--AGCUGCCG-GCUa----CUGU--------------GGCCC- -5'
11071 5' -59.4 NC_002794.1 + 149727 0.67 0.84043
Target:  5'- uGCcucGCUaCGGCGuGCCGGUGgaGCGgCGGGa -3'
miRNA:   3'- -CGc--CGA-GCUGC-CGGCUAC--UGUgGCCC- -5'
11071 5' -59.4 NC_002794.1 + 71207 0.67 0.84043
Target:  5'- cGCGuGCUCGucgaagguccCGGCCGcguaGUGGCgGCCGGc -3'
miRNA:   3'- -CGC-CGAGCu---------GCCGGC----UACUG-UGGCCc -5'
11071 5' -59.4 NC_002794.1 + 180941 0.67 0.84043
Target:  5'- uCGGuCUCGcguccGCGGCCGAcgcgGACuccgUCGGGg -3'
miRNA:   3'- cGCC-GAGC-----UGCCGGCUa---CUGu---GGCCC- -5'
11071 5' -59.4 NC_002794.1 + 150592 0.67 0.84043
Target:  5'- -gGGCgcccgagGACGGCCG--GGCGCCGGc -3'
miRNA:   3'- cgCCGag-----CUGCCGGCuaCUGUGGCCc -5'
11071 5' -59.4 NC_002794.1 + 107328 0.67 0.84043
Target:  5'- cGCGGUUCGGCuucGGUCcGUGGguCCGGu -3'
miRNA:   3'- -CGCCGAGCUG---CCGGcUACUguGGCCc -5'
11071 5' -59.4 NC_002794.1 + 114719 0.67 0.84043
Target:  5'- gGCGGCggCGGCGGCuccggguucguCGAgccGGCGCCGc- -3'
miRNA:   3'- -CGCCGa-GCUGCCG-----------GCUa--CUGUGGCcc -5'
11071 5' -59.4 NC_002794.1 + 140688 0.67 0.84043
Target:  5'- uCGGUgCGACGGaCCGGccgccgcGAC-CCGGGa -3'
miRNA:   3'- cGCCGaGCUGCC-GGCUa------CUGuGGCCC- -5'
11071 5' -59.4 NC_002794.1 + 111631 0.67 0.84043
Target:  5'- cGCGGC-CG-CcGCCGGUcgGGCGCCGcGGc -3'
miRNA:   3'- -CGCCGaGCuGcCGGCUA--CUGUGGC-CC- -5'
11071 5' -59.4 NC_002794.1 + 194004 0.67 0.84043
Target:  5'- cCGGCuUCGccuucGCGGCCGccGcCGCCGGc -3'
miRNA:   3'- cGCCG-AGC-----UGCCGGCuaCuGUGGCCc -5'
11071 5' -59.4 NC_002794.1 + 145318 0.67 0.84043
Target:  5'- cCGGCgCG-CGGCgGgcGGCGCuCGGGc -3'
miRNA:   3'- cGCCGaGCuGCCGgCuaCUGUG-GCCC- -5'
11071 5' -59.4 NC_002794.1 + 134692 0.67 0.832669
Target:  5'- uUGGCUCGACcGCCucugGGgGCCGGa -3'
miRNA:   3'- cGCCGAGCUGcCGGcua-CUgUGGCCc -5'
11071 5' -59.4 NC_002794.1 + 124394 0.67 0.832669
Target:  5'- gGCGGCgcgUCGcCGGUCGucggGGCGCCGu- -3'
miRNA:   3'- -CGCCG---AGCuGCCGGCua--CUGUGGCcc -5'
11071 5' -59.4 NC_002794.1 + 145696 0.67 0.832669
Target:  5'- uCGaGCUCGACcugaGGCCGAaaacgGGgAUCGGGc -3'
miRNA:   3'- cGC-CGAGCUG----CCGGCUa----CUgUGGCCC- -5'
11071 5' -59.4 NC_002794.1 + 185472 0.67 0.832669
Target:  5'- cGCGGg-CGGCGGCCGc-GGCGagGGGa -3'
miRNA:   3'- -CGCCgaGCUGCCGGCuaCUGUggCCC- -5'
11071 5' -59.4 NC_002794.1 + 194115 0.67 0.832669
Target:  5'- uGCGGCaccgcgCGcACGGCUGA-GGCAgCGGc -3'
miRNA:   3'- -CGCCGa-----GC-UGCCGGCUaCUGUgGCCc -5'
11071 5' -59.4 NC_002794.1 + 82699 0.67 0.832669
Target:  5'- cCGGCgcgccgaGACGcGCCGAgGACGCCGc- -3'
miRNA:   3'- cGCCGag-----CUGC-CGGCUaCUGUGGCcc -5'
11071 5' -59.4 NC_002794.1 + 128162 0.67 0.832669
Target:  5'- gGCGGCUCG-C-GCCGcgGACGggUCGGu -3'
miRNA:   3'- -CGCCGAGCuGcCGGCuaCUGU--GGCCc -5'
11071 5' -59.4 NC_002794.1 + 141302 0.67 0.832669
Target:  5'- cGUGGCgCGcCGG-CGAcGGCACCGGc -3'
miRNA:   3'- -CGCCGaGCuGCCgGCUaCUGUGGCCc -5'
11071 5' -59.4 NC_002794.1 + 121318 0.67 0.827934
Target:  5'- gGCGGUUgGcccucgaggcgccgcGCGGCUGA-GAaACCGGGa -3'
miRNA:   3'- -CGCCGAgC---------------UGCCGGCUaCUgUGGCCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.