miRNA display CGI


Results 61 - 80 of 241 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11071 5' -59.4 NC_002794.1 + 37908 0.67 0.825545
Target:  5'- aGCGGCUCGcCGGCCucaacgucaacCGCCGcGGc -3'
miRNA:   3'- -CGCCGAGCuGCCGGcuacu------GUGGC-CC- -5'
11071 5' -59.4 NC_002794.1 + 187458 0.67 0.824745
Target:  5'- cGCcGCUCGGCGucGCuCGgcGcGCGCCGGGc -3'
miRNA:   3'- -CGcCGAGCUGC--CG-GCuaC-UGUGGCCC- -5'
11071 5' -59.4 NC_002794.1 + 137346 0.67 0.824745
Target:  5'- aCGGCUCGGCGucGUCGggGucuucuucgaGCCGGGc -3'
miRNA:   3'- cGCCGAGCUGC--CGGCuaCug--------UGGCCC- -5'
11071 5' -59.4 NC_002794.1 + 156412 0.67 0.824745
Target:  5'- cGCGGCcgCGgccACGGCCGGcgggugaGAgACCGGu -3'
miRNA:   3'- -CGCCGa-GC---UGCCGGCUa------CUgUGGCCc -5'
11071 5' -59.4 NC_002794.1 + 66950 0.67 0.824745
Target:  5'- -aGGCccUCGA-GGCCGgcGAgucgcuCGCCGGGg -3'
miRNA:   3'- cgCCG--AGCUgCCGGCuaCU------GUGGCCC- -5'
11071 5' -59.4 NC_002794.1 + 58061 0.67 0.824745
Target:  5'- gGCGGCccCGGCGGCgGcgGGa--CGGGc -3'
miRNA:   3'- -CGCCGa-GCUGCCGgCuaCUgugGCCC- -5'
11071 5' -59.4 NC_002794.1 + 131570 0.67 0.822338
Target:  5'- cGCGGCgcccgucUUGACGGCCucgccucuCAUCGGGa -3'
miRNA:   3'- -CGCCG-------AGCUGCCGGcuacu---GUGGCCC- -5'
11071 5' -59.4 NC_002794.1 + 137921 0.67 0.816666
Target:  5'- cGUGGCguUCG-CGGUCGAUGA-GCUGGa -3'
miRNA:   3'- -CGCCG--AGCuGCCGGCUACUgUGGCCc -5'
11071 5' -59.4 NC_002794.1 + 88930 0.67 0.816666
Target:  5'- cGCGGUgcggCGAUGGCgCGGUGuaacuCGCuCGGu -3'
miRNA:   3'- -CGCCGa---GCUGCCG-GCUACu----GUG-GCCc -5'
11071 5' -59.4 NC_002794.1 + 102697 0.67 0.816666
Target:  5'- aCGuGCU-GACGGCCGGgc-CGCCGGa -3'
miRNA:   3'- cGC-CGAgCUGCCGGCUacuGUGGCCc -5'
11071 5' -59.4 NC_002794.1 + 71598 0.67 0.81585
Target:  5'- uGCGGCUgGGCGaacagcaGCCGcuUGAC-CCGGu -3'
miRNA:   3'- -CGCCGAgCUGC-------CGGCu-ACUGuGGCCc -5'
11071 5' -59.4 NC_002794.1 + 121369 0.67 0.808439
Target:  5'- aCGGCgucCGAgcCGGCCGc---CGCCGGGa -3'
miRNA:   3'- cGCCGa--GCU--GCCGGCuacuGUGGCCC- -5'
11071 5' -59.4 NC_002794.1 + 94152 0.67 0.808439
Target:  5'- gGCGGCgcugGACGGUgGggGGgACgGGGa -3'
miRNA:   3'- -CGCCGag--CUGCCGgCuaCUgUGgCCC- -5'
11071 5' -59.4 NC_002794.1 + 21459 0.67 0.808439
Target:  5'- uCGGCgucgccgUGACGGCaaCGGUGGCAgCGGc -3'
miRNA:   3'- cGCCGa------GCUGCCG--GCUACUGUgGCCc -5'
11071 5' -59.4 NC_002794.1 + 75357 0.67 0.807608
Target:  5'- aCGGUUCGccaccgacccgccGCGGCCGgcGGCGgCGGc -3'
miRNA:   3'- cGCCGAGC-------------UGCCGGCuaCUGUgGCCc -5'
11071 5' -59.4 NC_002794.1 + 70671 0.67 0.800069
Target:  5'- gGCGGC-CGccGCGG-CGGUGACguccugucgccGCUGGGg -3'
miRNA:   3'- -CGCCGaGC--UGCCgGCUACUG-----------UGGCCC- -5'
11071 5' -59.4 NC_002794.1 + 126400 0.67 0.800069
Target:  5'- gGCGGCgugcgCGGCGGUCGcgaucUGGCugCuGGu -3'
miRNA:   3'- -CGCCGa----GCUGCCGGCu----ACUGugGcCC- -5'
11071 5' -59.4 NC_002794.1 + 140006 0.67 0.800069
Target:  5'- uGCGGgUgGA-GGCCGcgGAgGCCGcGGc -3'
miRNA:   3'- -CGCCgAgCUgCCGGCuaCUgUGGC-CC- -5'
11071 5' -59.4 NC_002794.1 + 71403 0.67 0.800069
Target:  5'- uGCGGCUCGGgcCGGCCGucgucCAgCGuGGa -3'
miRNA:   3'- -CGCCGAGCU--GCCGGCuacu-GUgGC-CC- -5'
11071 5' -59.4 NC_002794.1 + 85990 0.67 0.800069
Target:  5'- cGCGGCcccgcCGACGGuuCCGAacccgcUGGCGCCGa- -3'
miRNA:   3'- -CGCCGa----GCUGCC--GGCU------ACUGUGGCcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.