miRNA display CGI


Results 1 - 20 of 241 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11071 5' -59.4 NC_002794.1 + 287 0.75 0.390266
Target:  5'- gGCGGCccUGGCGcGCCGA--ACGCCGGGc -3'
miRNA:   3'- -CGCCGa-GCUGC-CGGCUacUGUGGCCC- -5'
11071 5' -59.4 NC_002794.1 + 8119 0.68 0.782932
Target:  5'- aGCGGg-CGGCGGCCuccucgGugACCGGc -3'
miRNA:   3'- -CGCCgaGCUGCCGGcua---CugUGGCCc -5'
11071 5' -59.4 NC_002794.1 + 9350 0.66 0.855442
Target:  5'- cCGGCaCGACGGUCGAaGG--UCGGGg -3'
miRNA:   3'- cGCCGaGCUGCCGGCUaCUguGGCCC- -5'
11071 5' -59.4 NC_002794.1 + 11631 0.69 0.734433
Target:  5'- -aGGCUCGacccacagcgacggGCGGCCGAcGACgcggcccGCCGGc -3'
miRNA:   3'- cgCCGAGC--------------UGCCGGCUaCUG-------UGGCCc -5'
11071 5' -59.4 NC_002794.1 + 12144 0.68 0.765315
Target:  5'- aCGGCUacuaCGAgCGGCCGAUcGC-CCGGa -3'
miRNA:   3'- cGCCGA----GCU-GCCGGCUAcUGuGGCCc -5'
11071 5' -59.4 NC_002794.1 + 12220 0.73 0.492195
Target:  5'- gGCGGCgUCGGCGgcGCCGgcGGCGCCGu- -3'
miRNA:   3'- -CGCCG-AGCUGC--CGGCuaCUGUGGCcc -5'
11071 5' -59.4 NC_002794.1 + 14611 0.68 0.791565
Target:  5'- -gGGCaccgCGACggGGCCGGaGACgggGCCGGGc -3'
miRNA:   3'- cgCCGa---GCUG--CCGGCUaCUG---UGGCCC- -5'
11071 5' -59.4 NC_002794.1 + 16306 0.65 0.882616
Target:  5'- gGCGGC-CG-CGGCCGGcugGAUcccccugccccugGCCGGc -3'
miRNA:   3'- -CGCCGaGCuGCCGGCUa--CUG-------------UGGCCc -5'
11071 5' -59.4 NC_002794.1 + 17427 0.66 0.869737
Target:  5'- cGCGGuCUCcGC-GCCGccGGCGCuCGGGc -3'
miRNA:   3'- -CGCC-GAGcUGcCGGCuaCUGUG-GCCC- -5'
11071 5' -59.4 NC_002794.1 + 19462 0.7 0.633653
Target:  5'- aGCGGCggCGGCGGCgGGaccCGCCGGu -3'
miRNA:   3'- -CGCCGa-GCUGCCGgCUacuGUGGCCc -5'
11071 5' -59.4 NC_002794.1 + 19535 0.66 0.876603
Target:  5'- cGCGGCgCGGCccGCCGGUGuCGgacCCGGa -3'
miRNA:   3'- -CGCCGaGCUGc-CGGCUACuGU---GGCCc -5'
11071 5' -59.4 NC_002794.1 + 20633 0.69 0.710186
Target:  5'- cCGGCugccUCGACGGCUGGUGcgaGCAa-GGGg -3'
miRNA:   3'- cGCCG----AGCUGCCGGCUAC---UGUggCCC- -5'
11071 5' -59.4 NC_002794.1 + 21373 0.66 0.870432
Target:  5'- cGCGGC--GGCGGCCGccgucucuuccucgGACACCGccGGc -3'
miRNA:   3'- -CGCCGagCUGCCGGCua------------CUGUGGC--CC- -5'
11071 5' -59.4 NC_002794.1 + 21459 0.67 0.808439
Target:  5'- uCGGCgucgccgUGACGGCaaCGGUGGCAgCGGc -3'
miRNA:   3'- cGCCGa------GCUGCCG--GCUACUGUgGCCc -5'
11071 5' -59.4 NC_002794.1 + 29213 0.7 0.662553
Target:  5'- gGCGG-UCGGCGGCCGucgGcCGCCGa- -3'
miRNA:   3'- -CGCCgAGCUGCCGGCua-CuGUGGCcc -5'
11071 5' -59.4 NC_002794.1 + 31669 0.66 0.855442
Target:  5'- aGCGuuugacCUCGGCGuGCgaGAUGAacaGCCGGGu -3'
miRNA:   3'- -CGCc-----GAGCUGC-CGg-CUACUg--UGGCCC- -5'
11071 5' -59.4 NC_002794.1 + 32262 0.69 0.687448
Target:  5'- gGC-GCUCGACGGCCGGccgaucggcgagcGACGCCGc- -3'
miRNA:   3'- -CGcCGAGCUGCCGGCUa------------CUGUGGCcc -5'
11071 5' -59.4 NC_002794.1 + 32581 0.71 0.595133
Target:  5'- cGCGGCggugcCGG-GGCCGGggccGGgGCCGGGg -3'
miRNA:   3'- -CGCCGa----GCUgCCGGCUa---CUgUGGCCC- -5'
11071 5' -59.4 NC_002794.1 + 32854 0.66 0.848023
Target:  5'- aGCGGCa--GCGGCCGAgccggcgGGCGgCGGcGg -3'
miRNA:   3'- -CGCCGagcUGCCGGCUa------CUGUgGCC-C- -5'
11071 5' -59.4 NC_002794.1 + 34736 0.68 0.747277
Target:  5'- gGCGGCcgcagagcgcgCGACGGCgCGGUGGgACgCGGc -3'
miRNA:   3'- -CGCCGa----------GCUGCCG-GCUACUgUG-GCCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.