miRNA display CGI


Results 21 - 40 of 241 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11071 5' -59.4 NC_002794.1 + 34847 0.66 0.869737
Target:  5'- aGCgGGCgUCGgaGCGggcGCCGcgGGCGCCGcGGa -3'
miRNA:   3'- -CG-CCG-AGC--UGC---CGGCuaCUGUGGC-CC- -5'
11071 5' -59.4 NC_002794.1 + 36411 0.69 0.70736
Target:  5'- cGCGuagCGGCGGCUGAUGaagcggaagaccagGCGCCGGa -3'
miRNA:   3'- -CGCcgaGCUGCCGGCUAC--------------UGUGGCCc -5'
11071 5' -59.4 NC_002794.1 + 37737 0.77 0.296607
Target:  5'- gGCGGCgccgccggCGGCGGCgCGgcGGCGCCGGcGg -3'
miRNA:   3'- -CGCCGa-------GCUGCCG-GCuaCUGUGGCC-C- -5'
11071 5' -59.4 NC_002794.1 + 37775 0.66 0.876603
Target:  5'- aGCGGCcgucgUCGuCGGCCGcaGGCGCCu-- -3'
miRNA:   3'- -CGCCG-----AGCuGCCGGCuaCUGUGGccc -5'
11071 5' -59.4 NC_002794.1 + 37908 0.67 0.825545
Target:  5'- aGCGGCUCGcCGGCCucaacgucaacCGCCGcGGc -3'
miRNA:   3'- -CGCCGAGCuGCCGGcuacu------GUGGC-CC- -5'
11071 5' -59.4 NC_002794.1 + 37967 0.75 0.38241
Target:  5'- gGCGGCUCGugGuacgaGCCGAUcGCggucaGCCGGGc -3'
miRNA:   3'- -CGCCGAGCugC-----CGGCUAcUG-----UGGCCC- -5'
11071 5' -59.4 NC_002794.1 + 40504 0.7 0.672152
Target:  5'- cGCcGCUCGAgucaCGGCCGccGACGCgccgaCGGGa -3'
miRNA:   3'- -CGcCGAGCU----GCCGGCuaCUGUG-----GCCC- -5'
11071 5' -59.4 NC_002794.1 + 42651 0.7 0.643296
Target:  5'- cGCGGCcgaagcCGACGgcGCCGccGGCACgGGGu -3'
miRNA:   3'- -CGCCGa-----GCUGC--CGGCuaCUGUGgCCC- -5'
11071 5' -59.4 NC_002794.1 + 43242 0.7 0.672152
Target:  5'- aGCGGCac--CGGCCGGa-ACGCCGGGu -3'
miRNA:   3'- -CGCCGagcuGCCGGCUacUGUGGCCC- -5'
11071 5' -59.4 NC_002794.1 + 44057 0.69 0.738119
Target:  5'- cGCGGCagCGACagaaGCCGcucgugGUGACauACCGGGc -3'
miRNA:   3'- -CGCCGa-GCUGc---CGGC------UACUG--UGGCCC- -5'
11071 5' -59.4 NC_002794.1 + 44169 0.69 0.691257
Target:  5'- aCGGCgcgagCGGCGGCUcGUcGACuCCGGGc -3'
miRNA:   3'- cGCCGa----GCUGCCGGcUA-CUGuGGCCC- -5'
11071 5' -59.4 NC_002794.1 + 44217 0.7 0.662553
Target:  5'- cCGGCUCGGgcGCCGAgGGCucgguGCCGGGc -3'
miRNA:   3'- cGCCGAGCUgcCGGCUaCUG-----UGGCCC- -5'
11071 5' -59.4 NC_002794.1 + 44261 0.76 0.323446
Target:  5'- gGCGGCUCGGCcGCCGGggacgGAggaguccgcgccCGCCGGGc -3'
miRNA:   3'- -CGCCGAGCUGcCGGCUa----CU------------GUGGCCC- -5'
11071 5' -59.4 NC_002794.1 + 44324 0.68 0.791565
Target:  5'- cGCGaGCgCGGCGGCgaagaaGAcGGCGCCGGc -3'
miRNA:   3'- -CGC-CGaGCUGCCGg-----CUaCUGUGGCCc -5'
11071 5' -59.4 NC_002794.1 + 44421 0.71 0.614369
Target:  5'- cCGGCgcCGAgCGGCuCGAcGACACCGGc -3'
miRNA:   3'- cGCCGa-GCU-GCCG-GCUaCUGUGGCCc -5'
11071 5' -59.4 NC_002794.1 + 44719 0.73 0.474307
Target:  5'- cGCGGCgaCGuCGGCCGgcGcCGCCGGa -3'
miRNA:   3'- -CGCCGa-GCuGCCGGCuaCuGUGGCCc -5'
11071 5' -59.4 NC_002794.1 + 46316 0.68 0.747277
Target:  5'- cGCGGCggCGACGGC-GccGuCGCCGcGGa -3'
miRNA:   3'- -CGCCGa-GCUGCCGgCuaCuGUGGC-CC- -5'
11071 5' -59.4 NC_002794.1 + 46384 0.77 0.28385
Target:  5'- gGCGcGCUaCGACGaGCUGAaacGGCACCGGGa -3'
miRNA:   3'- -CGC-CGA-GCUGC-CGGCUa--CUGUGGCCC- -5'
11071 5' -59.4 NC_002794.1 + 48538 0.69 0.738119
Target:  5'- -aGGCUCGGguCGGCCGAccacucCGCCGGc -3'
miRNA:   3'- cgCCGAGCU--GCCGGCUacu---GUGGCCc -5'
11071 5' -59.4 NC_002794.1 + 48724 0.69 0.72888
Target:  5'- cGCGGaucCGAcCGGCCGca-AUACCGGGu -3'
miRNA:   3'- -CGCCga-GCU-GCCGGCuacUGUGGCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.