miRNA display CGI


Results 41 - 60 of 241 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11071 5' -59.4 NC_002794.1 + 49418 0.76 0.33753
Target:  5'- cGCGGCggCGGCGGCCGucacGGCGuCCGGc -3'
miRNA:   3'- -CGCCGa-GCUGCCGGCua--CUGU-GGCCc -5'
11071 5' -59.4 NC_002794.1 + 50578 0.8 0.206492
Target:  5'- aCGGCgugcgCGGCGGCUGGguggccGGCGCCGGGg -3'
miRNA:   3'- cGCCGa----GCUGCCGGCUa-----CUGUGGCCC- -5'
11071 5' -59.4 NC_002794.1 + 50769 0.66 0.872506
Target:  5'- gGCGGCggCGACGGCgCGucucgggcGGCGCCuccucgcccggcgucGGGc -3'
miRNA:   3'- -CGCCGa-GCUGCCG-GCua------CUGUGG---------------CCC- -5'
11071 5' -59.4 NC_002794.1 + 51219 0.69 0.719566
Target:  5'- aGCGGC-CGGcCGGCCGAUGGgAaaCGGu -3'
miRNA:   3'- -CGCCGaGCU-GCCGGCUACUgUg-GCCc -5'
11071 5' -59.4 NC_002794.1 + 51301 0.7 0.652932
Target:  5'- gGCaGGCUCGAacCGGUCuaGAaGACgACCGGGa -3'
miRNA:   3'- -CG-CCGAGCU--GCCGG--CUaCUG-UGGCCC- -5'
11071 5' -59.4 NC_002794.1 + 51368 0.68 0.756344
Target:  5'- gGCGGCcgcccCGucCGGCCGgcGACAggcgcccuCCGGGc -3'
miRNA:   3'- -CGCCGa----GCu-GCCGGCuaCUGU--------GGCCC- -5'
11071 5' -59.4 NC_002794.1 + 53051 0.66 0.86904
Target:  5'- cGCGGCUccagcguaggcagCGcCGcGCCGccagcucgcGGCACCGGGc -3'
miRNA:   3'- -CGCCGA-------------GCuGC-CGGCua-------CUGUGGCCC- -5'
11071 5' -59.4 NC_002794.1 + 54990 0.71 0.624008
Target:  5'- cGCGGCgaCGGCGG-CGAcu-CGCCGGGc -3'
miRNA:   3'- -CGCCGa-GCUGCCgGCUacuGUGGCCC- -5'
11071 5' -59.4 NC_002794.1 + 55305 0.74 0.456751
Target:  5'- gGCGGCgucgCGGCGGgCGcgGGCGgcuuccgaggacCCGGGg -3'
miRNA:   3'- -CGCCGa---GCUGCCgGCuaCUGU------------GGCCC- -5'
11071 5' -59.4 NC_002794.1 + 55358 0.74 0.456751
Target:  5'- gGCGGCcgaGGCGGCCGA-GGCgGCCGaGGc -3'
miRNA:   3'- -CGCCGag-CUGCCGGCUaCUG-UGGC-CC- -5'
11071 5' -59.4 NC_002794.1 + 55403 0.75 0.398228
Target:  5'- gGCGGCcgaGGCGGCCGAggcGACcCCGGc -3'
miRNA:   3'- -CGCCGag-CUGCCGGCUa--CUGuGGCCc -5'
11071 5' -59.4 NC_002794.1 + 56163 0.7 0.681723
Target:  5'- aGCGGCa--GCGGCCccGGUGcacguagaGCACCGGGc -3'
miRNA:   3'- -CGCCGagcUGCCGG--CUAC--------UGUGGCCC- -5'
11071 5' -59.4 NC_002794.1 + 58061 0.67 0.824745
Target:  5'- gGCGGCccCGGCGGCgGcgGGa--CGGGc -3'
miRNA:   3'- -CGCCGa-GCUGCCGgCuaCUgugGCCC- -5'
11071 5' -59.4 NC_002794.1 + 60633 0.68 0.756344
Target:  5'- gGCGGaCcCGGC-GCCGgcGGCGCCGGc -3'
miRNA:   3'- -CGCC-GaGCUGcCGGCuaCUGUGGCCc -5'
11071 5' -59.4 NC_002794.1 + 61524 0.69 0.719566
Target:  5'- gGCGGCcgcCGGCGGCCGccgcgaagacGACGCCGc- -3'
miRNA:   3'- -CGCCGa--GCUGCCGGCua--------CUGUGGCcc -5'
11071 5' -59.4 NC_002794.1 + 61823 0.66 0.876603
Target:  5'- gGCGGCcgcCGGCGGCCGgcGuCACUc-- -3'
miRNA:   3'- -CGCCGa--GCUGCCGGCuaCuGUGGccc -5'
11071 5' -59.4 NC_002794.1 + 62081 0.72 0.547561
Target:  5'- gGCGGCgaCGACGGCgaCGcgGcGCGCCGGa -3'
miRNA:   3'- -CGCCGa-GCUGCCG--GCuaC-UGUGGCCc -5'
11071 5' -59.4 NC_002794.1 + 62478 0.71 0.614369
Target:  5'- cGCGcCUCGACGaGCgCGAgugGACGgCGGGc -3'
miRNA:   3'- -CGCcGAGCUGC-CG-GCUa--CUGUgGCCC- -5'
11071 5' -59.4 NC_002794.1 + 63450 0.68 0.77418
Target:  5'- aCGGCcgCGGCGGCgaCGAUGACGaCGaGGc -3'
miRNA:   3'- cGCCGa-GCUGCCG--GCUACUGUgGC-CC- -5'
11071 5' -59.4 NC_002794.1 + 63686 0.66 0.860529
Target:  5'- cGCGGCgaCGACGaugacgacgacggcGCCGgcGcCGCCGGa -3'
miRNA:   3'- -CGCCGa-GCUGC--------------CGGCuaCuGUGGCCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.