miRNA display CGI


Results 1 - 20 of 241 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11071 5' -59.4 NC_002794.1 + 194115 0.67 0.832669
Target:  5'- uGCGGCaccgcgCGcACGGCUGA-GGCAgCGGc -3'
miRNA:   3'- -CGCCGa-----GC-UGCCGGCUaCUGUgGCCc -5'
11071 5' -59.4 NC_002794.1 + 194004 0.67 0.84043
Target:  5'- cCGGCuUCGccuucGCGGCCGccGcCGCCGGc -3'
miRNA:   3'- cGCCG-AGC-----UGCCGGCuaCuGUGGCCc -5'
11071 5' -59.4 NC_002794.1 + 193781 0.66 0.869737
Target:  5'- cGCccGCUCGAuCGcCCGAcGACGCCGGc -3'
miRNA:   3'- -CGc-CGAGCU-GCcGGCUaCUGUGGCCc -5'
11071 5' -59.4 NC_002794.1 + 191984 0.71 0.610516
Target:  5'- aCGGCUccucCGACGGCCGGgacgguagcggcgGugGCCGcGGc -3'
miRNA:   3'- cGCCGA----GCUGCCGGCUa------------CugUGGC-CC- -5'
11071 5' -59.4 NC_002794.1 + 191875 0.74 0.414458
Target:  5'- gGCGGCggagggGGCGGCgGAggcgggaucGGCACCGGGa -3'
miRNA:   3'- -CGCCGag----CUGCCGgCUa--------CUGUGGCCC- -5'
11071 5' -59.4 NC_002794.1 + 188364 0.76 0.359481
Target:  5'- cCGGCcggCGGCGGCCGAgGGCGuucucCCGGGc -3'
miRNA:   3'- cGCCGa--GCUGCCGGCUaCUGU-----GGCCC- -5'
11071 5' -59.4 NC_002794.1 + 188252 0.69 0.691257
Target:  5'- gGCGGCggCGGCGGuaGcgGcGgGCCGGGu -3'
miRNA:   3'- -CGCCGa-GCUGCCggCuaC-UgUGGCCC- -5'
11071 5' -59.4 NC_002794.1 + 187836 0.69 0.738119
Target:  5'- uCGGCUCGGCGcGCCGAgGGCucugcccaGCCGc- -3'
miRNA:   3'- cGCCGAGCUGC-CGGCUaCUG--------UGGCcc -5'
11071 5' -59.4 NC_002794.1 + 187458 0.67 0.824745
Target:  5'- cGCcGCUCGGCGucGCuCGgcGcGCGCCGGGc -3'
miRNA:   3'- -CGcCGAGCUGC--CG-GCuaC-UGUGGCCC- -5'
11071 5' -59.4 NC_002794.1 + 186294 0.71 0.585548
Target:  5'- cGCGGC-CaGGCGGCCGGU--CGCCGcGGc -3'
miRNA:   3'- -CGCCGaG-CUGCCGGCUAcuGUGGC-CC- -5'
11071 5' -59.4 NC_002794.1 + 185769 0.69 0.698853
Target:  5'- cGCGGCcgcccgucacacgUCGGcCGGCgCGggGACccacaucGCCGGGa -3'
miRNA:   3'- -CGCCG-------------AGCU-GCCG-GCuaCUG-------UGGCCC- -5'
11071 5' -59.4 NC_002794.1 + 185472 0.67 0.832669
Target:  5'- cGCGGg-CGGCGGCCGc-GGCGagGGGa -3'
miRNA:   3'- -CGCCgaGCUGCCGGCuaCUGUggCCC- -5'
11071 5' -59.4 NC_002794.1 + 185264 0.69 0.72888
Target:  5'- aGCGGacgcCGcCGGCCGAgugGGCcGCCGGa -3'
miRNA:   3'- -CGCCga--GCuGCCGGCUa--CUG-UGGCCc -5'
11071 5' -59.4 NC_002794.1 + 184579 0.69 0.738119
Target:  5'- cGCGGCggCGGCGGCCacgcgcGGC-CgCGGGa -3'
miRNA:   3'- -CGCCGa-GCUGCCGGcua---CUGuG-GCCC- -5'
11071 5' -59.4 NC_002794.1 + 184319 0.69 0.738119
Target:  5'- aCGGCUCcgcucACGGCCGggGACAgCGa- -3'
miRNA:   3'- cGCCGAGc----UGCCGGCuaCUGUgGCcc -5'
11071 5' -59.4 NC_002794.1 + 182971 0.69 0.691257
Target:  5'- cCGGCUccucguucgagcCGACGGCCGgcGcuuCGCCGcGGg -3'
miRNA:   3'- cGCCGA------------GCUGCCGGCuaCu--GUGGC-CC- -5'
11071 5' -59.4 NC_002794.1 + 182539 0.72 0.556994
Target:  5'- cGCGGCagCGacugcgccGCGGCCGGcaccGuCACCGGGa -3'
miRNA:   3'- -CGCCGa-GC--------UGCCGGCUa---CuGUGGCCC- -5'
11071 5' -59.4 NC_002794.1 + 182341 0.69 0.738119
Target:  5'- gGCGaGCg-GACGGgCGGgcggGugACCGGGc -3'
miRNA:   3'- -CGC-CGagCUGCCgGCUa---CugUGGCCC- -5'
11071 5' -59.4 NC_002794.1 + 181748 0.7 0.66063
Target:  5'- aGCGGC-CGGCcagcccgcugacGCCGAUGGCGCCGc- -3'
miRNA:   3'- -CGCCGaGCUGc-----------CGGCUACUGUGGCcc -5'
11071 5' -59.4 NC_002794.1 + 181577 0.66 0.848023
Target:  5'- -aGGaUCGACaGGCUGcgGGCcgcgACCGGGu -3'
miRNA:   3'- cgCCgAGCUG-CCGGCuaCUG----UGGCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.