miRNA display CGI


Results 21 - 40 of 241 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11071 5' -59.4 NC_002794.1 + 180941 0.67 0.84043
Target:  5'- uCGGuCUCGcguccGCGGCCGAcgcgGACuccgUCGGGg -3'
miRNA:   3'- cGCC-GAGC-----UGCCGGCUa---CUGu---GGCCC- -5'
11071 5' -59.4 NC_002794.1 + 180760 0.78 0.253291
Target:  5'- gGCGGCuUCGGCGGCaacugucCGGgcgGugGCCGGGg -3'
miRNA:   3'- -CGCCG-AGCUGCCG-------GCUa--CugUGGCCC- -5'
11071 5' -59.4 NC_002794.1 + 180080 0.66 0.869737
Target:  5'- aGCGGCg-GACGGUauCGGUG-CGCaGGGc -3'
miRNA:   3'- -CGCCGagCUGCCG--GCUACuGUGgCCC- -5'
11071 5' -59.4 NC_002794.1 + 179918 0.76 0.352054
Target:  5'- aGCGGCUcCGACGGUuuCGAaGACgacgucgcggGCCGGGg -3'
miRNA:   3'- -CGCCGA-GCUGCCG--GCUaCUG----------UGGCCC- -5'
11071 5' -59.4 NC_002794.1 + 179696 0.74 0.448105
Target:  5'- gGCGGCggCGACGGUgGc-GACGCCGGcGg -3'
miRNA:   3'- -CGCCGa-GCUGCCGgCuaCUGUGGCC-C- -5'
11071 5' -59.4 NC_002794.1 + 178800 0.75 0.37466
Target:  5'- gGCGGCUCGGC--CCGggGGgACCGGGc -3'
miRNA:   3'- -CGCCGAGCUGccGGCuaCUgUGGCCC- -5'
11071 5' -59.4 NC_002794.1 + 178426 0.71 0.624008
Target:  5'- aCGGaccgcgCGACGGgCGGUGACGCCGu- -3'
miRNA:   3'- cGCCga----GCUGCCgGCUACUGUGGCcc -5'
11071 5' -59.4 NC_002794.1 + 176894 0.72 0.519588
Target:  5'- -gGGCUCGAgGGgaCCGGUGGgauUGCCGGGu -3'
miRNA:   3'- cgCCGAGCUgCC--GGCUACU---GUGGCCC- -5'
11071 5' -59.4 NC_002794.1 + 156412 0.67 0.824745
Target:  5'- cGCGGCcgCGgccACGGCCGGcgggugaGAgACCGGu -3'
miRNA:   3'- -CGCCGa-GC---UGCCGGCUa------CUgUGGCCc -5'
11071 5' -59.4 NC_002794.1 + 155910 0.74 0.456751
Target:  5'- cCGGCUCGACGuGCgGAgccgGGugcuugccguCACCGGGg -3'
miRNA:   3'- cGCCGAGCUGC-CGgCUa---CU----------GUGGCCC- -5'
11071 5' -59.4 NC_002794.1 + 154290 0.76 0.352054
Target:  5'- cGCGGCUCGACGGUCGAaucgaGCCuccucGGGa -3'
miRNA:   3'- -CGCCGAGCUGCCGGCUacug-UGG-----CCC- -5'
11071 5' -59.4 NC_002794.1 + 151638 0.72 0.528853
Target:  5'- uUGGCUCGccgcCGGCCGGcacuUGGCucgccGCCGGGu -3'
miRNA:   3'- cGCCGAGCu---GCCGGCU----ACUG-----UGGCCC- -5'
11071 5' -59.4 NC_002794.1 + 150807 0.74 0.43955
Target:  5'- cGCGGCg-GACGGCCGAgc-CGCUGGa -3'
miRNA:   3'- -CGCCGagCUGCCGGCUacuGUGGCCc -5'
11071 5' -59.4 NC_002794.1 + 150592 0.67 0.84043
Target:  5'- -gGGCgcccgagGACGGCCG--GGCGCCGGc -3'
miRNA:   3'- cgCCGag-----CUGCCGGCuaCUGUGGCCc -5'
11071 5' -59.4 NC_002794.1 + 150255 0.76 0.33753
Target:  5'- uGCGGCUCGugccgcuCGGUCGAcUGACGCCGc- -3'
miRNA:   3'- -CGCCGAGCu------GCCGGCU-ACUGUGGCcc -5'
11071 5' -59.4 NC_002794.1 + 149727 0.67 0.84043
Target:  5'- uGCcucGCUaCGGCGuGCCGGUGgaGCGgCGGGa -3'
miRNA:   3'- -CGc--CGA-GCUGC-CGGCUAC--UGUgGCCC- -5'
11071 5' -59.4 NC_002794.1 + 149679 0.69 0.72888
Target:  5'- cGCGucgcGCUCGACuGGCCGcgGGgGCCGc- -3'
miRNA:   3'- -CGC----CGAGCUG-CCGGCuaCUgUGGCcc -5'
11071 5' -59.4 NC_002794.1 + 149282 0.69 0.691257
Target:  5'- gGCGGCgCGGCGGCuCGcu--CACgGGGg -3'
miRNA:   3'- -CGCCGaGCUGCCG-GCuacuGUGgCCC- -5'
11071 5' -59.4 NC_002794.1 + 148099 0.68 0.760842
Target:  5'- aGCaGCUgccgcucaagaagCGACGGUCGGUGucgggcgcggggcCGCCGGGg -3'
miRNA:   3'- -CGcCGA-------------GCUGCCGGCUACu------------GUGGCCC- -5'
11071 5' -59.4 NC_002794.1 + 147111 0.66 0.865526
Target:  5'- cCGGCccaaggacgaagacgUCGACGGCgguuCGAgacGGCcCCGGGg -3'
miRNA:   3'- cGCCG---------------AGCUGCCG----GCUa--CUGuGGCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.