miRNA display CGI


Results 41 - 60 of 241 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11071 5' -59.4 NC_002794.1 + 66740 0.66 0.876603
Target:  5'- gGCGGUggCGGCGGCgCGuacGAcCGCUGGa -3'
miRNA:   3'- -CGCCGa-GCUGCCG-GCua-CU-GUGGCCc -5'
11071 5' -59.4 NC_002794.1 + 61823 0.66 0.876603
Target:  5'- gGCGGCcgcCGGCGGCCGgcGuCACUc-- -3'
miRNA:   3'- -CGCCGa--GCUGCCGGCuaCuGUGGccc -5'
11071 5' -59.4 NC_002794.1 + 37775 0.66 0.876603
Target:  5'- aGCGGCcgucgUCGuCGGCCGcaGGCGCCu-- -3'
miRNA:   3'- -CGCCG-----AGCuGCCGGCuaCUGUGGccc -5'
11071 5' -59.4 NC_002794.1 + 19535 0.66 0.876603
Target:  5'- cGCGGCgCGGCccGCCGGUGuCGgacCCGGa -3'
miRNA:   3'- -CGCCGaGCUGc-CGGCUACuGU---GGCCc -5'
11071 5' -59.4 NC_002794.1 + 94220 0.66 0.876603
Target:  5'- gGUGGCggCGACGGgCGGgcGgGCCGGu -3'
miRNA:   3'- -CGCCGa-GCUGCCgGCUacUgUGGCCc -5'
11071 5' -59.4 NC_002794.1 + 127358 0.66 0.869737
Target:  5'- cGCGGCggCGgcGCGGCCGcucGUGuCGgCGGa -3'
miRNA:   3'- -CGCCGa-GC--UGCCGGC---UACuGUgGCCc -5'
11071 5' -59.4 NC_002794.1 + 135462 0.66 0.869737
Target:  5'- cGgGGCcCG-CGGCCGAcgacGACGCCGc- -3'
miRNA:   3'- -CgCCGaGCuGCCGGCUa---CUGUGGCcc -5'
11071 5' -59.4 NC_002794.1 + 128531 0.66 0.855442
Target:  5'- cUGGCUCugGACGGUCGGguGCGCCGu- -3'
miRNA:   3'- cGCCGAG--CUGCCGGCUacUGUGGCcc -5'
11071 5' -59.4 NC_002794.1 + 122666 0.66 0.855442
Target:  5'- gGCGGCgcaggccCGGCuGuGCCGGUcgcgccaGCGCCGGGc -3'
miRNA:   3'- -CGCCGa------GCUG-C-CGGCUAc------UGUGGCCC- -5'
11071 5' -59.4 NC_002794.1 + 63686 0.66 0.860529
Target:  5'- cGCGGCgaCGACGaugacgacgacggcGCCGgcGcCGCCGGa -3'
miRNA:   3'- -CGCCGa-GCUGC--------------CGGCuaCuGUGGCCc -5'
11071 5' -59.4 NC_002794.1 + 137392 0.66 0.862682
Target:  5'- cGCGGgUccggucugucCGGCGuCCGcgGACGCCGcGGa -3'
miRNA:   3'- -CGCCgA----------GCUGCcGGCuaCUGUGGC-CC- -5'
11071 5' -59.4 NC_002794.1 + 142150 0.66 0.862682
Target:  5'- aCGGCggaGGCGG-CGGUaGCACCGGc -3'
miRNA:   3'- cGCCGag-CUGCCgGCUAcUGUGGCCc -5'
11071 5' -59.4 NC_002794.1 + 53051 0.66 0.86904
Target:  5'- cGCGGCUccagcguaggcagCGcCGcGCCGccagcucgcGGCACCGGGc -3'
miRNA:   3'- -CGCCGA-------------GCuGC-CGGCua-------CUGUGGCCC- -5'
11071 5' -59.4 NC_002794.1 + 147111 0.66 0.865526
Target:  5'- cCGGCccaaggacgaagacgUCGACGGCgguuCGAgacGGCcCCGGGg -3'
miRNA:   3'- cGCCG---------------AGCUGCCG----GCUa--CUGuGGCCC- -5'
11071 5' -59.4 NC_002794.1 + 34847 0.66 0.869737
Target:  5'- aGCgGGCgUCGgaGCGggcGCCGcgGGCGCCGcGGa -3'
miRNA:   3'- -CG-CCG-AGC--UGC---CGGCuaCUGUGGC-CC- -5'
11071 5' -59.4 NC_002794.1 + 135566 0.66 0.86904
Target:  5'- cGCaGGC-CGGCGaCCGAUcggaaacGuCGCCGGGg -3'
miRNA:   3'- -CG-CCGaGCUGCcGGCUA-------CuGUGGCCC- -5'
11071 5' -59.4 NC_002794.1 + 125015 0.66 0.869737
Target:  5'- aGCGGUccgCGGCGGCCGu---CACCa-- -3'
miRNA:   3'- -CGCCGa--GCUGCCGGCuacuGUGGccc -5'
11071 5' -59.4 NC_002794.1 + 131386 0.66 0.869737
Target:  5'- uCGGCgccgCGcccgucaucACGGCCucgcccguGAUcGGCACCGGGc -3'
miRNA:   3'- cGCCGa---GC---------UGCCGG--------CUA-CUGUGGCCC- -5'
11071 5' -59.4 NC_002794.1 + 95021 0.66 0.869737
Target:  5'- gGCGGCUgugCGGCaucucGCCGGUGGCGgcgcCCGaGGc -3'
miRNA:   3'- -CGCCGA---GCUGc----CGGCUACUGU----GGC-CC- -5'
11071 5' -59.4 NC_002794.1 + 70872 0.66 0.869737
Target:  5'- gGCGGCggcagCGGCGGCuccuCGA--GCGCCaGGu -3'
miRNA:   3'- -CGCCGa----GCUGCCG----GCUacUGUGGcCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.