miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11072 5' -50.6 NC_002794.1 + 46852 0.66 0.998521
Target:  5'- cGUCCugGUCuuUAUcgcCGUGAccaagCUGCCg -3'
miRNA:   3'- -UAGGugCAGcuAUAa--GCGCUa----GACGG- -5'
11072 5' -50.6 NC_002794.1 + 181820 0.66 0.998521
Target:  5'- --gCACGUCGggGUUCGCG----GCCa -3'
miRNA:   3'- uagGUGCAGCuaUAAGCGCuagaCGG- -5'
11072 5' -50.6 NC_002794.1 + 129801 0.66 0.998226
Target:  5'- aAUUCGCuGUCGGac--CGCG-UCUGCCg -3'
miRNA:   3'- -UAGGUG-CAGCUauaaGCGCuAGACGG- -5'
11072 5' -50.6 NC_002794.1 + 161079 0.66 0.997485
Target:  5'- gGUCCG-GUUGAUGUUCGUGGcgCUaCCa -3'
miRNA:   3'- -UAGGUgCAGCUAUAAGCGCUa-GAcGG- -5'
11072 5' -50.6 NC_002794.1 + 175412 0.66 0.996502
Target:  5'- uUCCACGcCGGUGa--GCGA--UGCCg -3'
miRNA:   3'- uAGGUGCaGCUAUaagCGCUagACGG- -5'
11072 5' -50.6 NC_002794.1 + 185515 0.66 0.996502
Target:  5'- cUCCGCGUCGGcGUcaugaCGCGccucAUCUcGCCa -3'
miRNA:   3'- uAGGUGCAGCUaUAa----GCGC----UAGA-CGG- -5'
11072 5' -50.6 NC_002794.1 + 136487 0.66 0.996502
Target:  5'- --aCAgGUCGAUGccUUCGCGGUUgGUCa -3'
miRNA:   3'- uagGUgCAGCUAU--AAGCGCUAGaCGG- -5'
11072 5' -50.6 NC_002794.1 + 129142 0.66 0.996502
Target:  5'- --gCGCGUCGAgacugugUCGCGGcccUCgcgGCCg -3'
miRNA:   3'- uagGUGCAGCUaua----AGCGCU---AGa--CGG- -5'
11072 5' -50.6 NC_002794.1 + 191563 0.66 0.996502
Target:  5'- gGUCCACGaCGccgcUUCGCcGAagCUGCCg -3'
miRNA:   3'- -UAGGUGCaGCuau-AAGCG-CUa-GACGG- -5'
11072 5' -50.6 NC_002794.1 + 190992 0.67 0.995904
Target:  5'- --gCGCGgCGAcggcgUCGCGAUCgGCCg -3'
miRNA:   3'- uagGUGCaGCUaua--AGCGCUAGaCGG- -5'
11072 5' -50.6 NC_002794.1 + 721 0.67 0.995904
Target:  5'- cUCCGCGacccCGGgggcucuguuUUCGCGGggcUCUGCCg -3'
miRNA:   3'- uAGGUGCa---GCUau--------AAGCGCU---AGACGG- -5'
11072 5' -50.6 NC_002794.1 + 59224 0.67 0.995904
Target:  5'- -gCCGCGgcgcgCGAgcucUUCGCGcugCUGCCc -3'
miRNA:   3'- uaGGUGCa----GCUau--AAGCGCua-GACGG- -5'
11072 5' -50.6 NC_002794.1 + 14480 0.67 0.995224
Target:  5'- -gCCGCGcUCGcUGUUCGCGG-CggcgGCCc -3'
miRNA:   3'- uaGGUGC-AGCuAUAAGCGCUaGa---CGG- -5'
11072 5' -50.6 NC_002794.1 + 54355 0.67 0.995224
Target:  5'- uUCCGCGucUCGAUGgcCGUGAacaUGCCc -3'
miRNA:   3'- uAGGUGC--AGCUAUaaGCGCUag-ACGG- -5'
11072 5' -50.6 NC_002794.1 + 123271 0.67 0.994455
Target:  5'- gGUCCGgGccgCGGUcgUCGCGGgagacCUGCUg -3'
miRNA:   3'- -UAGGUgCa--GCUAuaAGCGCUa----GACGG- -5'
11072 5' -50.6 NC_002794.1 + 181673 0.67 0.993588
Target:  5'- --aCACGUUGGUGUgCGCGGaCcGCCg -3'
miRNA:   3'- uagGUGCAGCUAUAaGCGCUaGaCGG- -5'
11072 5' -50.6 NC_002794.1 + 112497 0.68 0.991532
Target:  5'- cUCCACGUaccgCGAgcggUCGCGGUgCUGgCg -3'
miRNA:   3'- uAGGUGCA----GCUaua-AGCGCUA-GACgG- -5'
11072 5' -50.6 NC_002794.1 + 129650 0.68 0.990324
Target:  5'- -aCCGCGgucgcUUGGUAUauaagucagCGCGAUCUGCUc -3'
miRNA:   3'- uaGGUGC-----AGCUAUAa--------GCGCUAGACGG- -5'
11072 5' -50.6 NC_002794.1 + 179113 0.68 0.988985
Target:  5'- cGUCCGCGgucCGGgcg-CGCGGUCgGUCg -3'
miRNA:   3'- -UAGGUGCa--GCUauaaGCGCUAGaCGG- -5'
11072 5' -50.6 NC_002794.1 + 138354 0.68 0.988985
Target:  5'- uUCCGCG-CGA-----GCGAUCUGCUu -3'
miRNA:   3'- uAGGUGCaGCUauaagCGCUAGACGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.