miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11074 3' -60.1 NC_002794.1 + 46261 0.66 0.84138
Target:  5'- uUCCUCGGgccguCGACCCCacuccGAGcGU--UCCGAa -3'
miRNA:   3'- -AGGAGCC-----GCUGGGG-----CUC-CAguAGGCU- -5'
11074 3' -60.1 NC_002794.1 + 145539 0.66 0.833613
Target:  5'- gCCUCGGgCG-CCCCGAGcGgc--CCGAc -3'
miRNA:   3'- aGGAGCC-GCuGGGGCUC-CaguaGGCU- -5'
11074 3' -60.1 NC_002794.1 + 42126 0.66 0.833613
Target:  5'- gCUUCGGCGACgaguaCuuGAGcGUCuugCCGAg -3'
miRNA:   3'- aGGAGCCGCUG-----GggCUC-CAGua-GGCU- -5'
11074 3' -60.1 NC_002794.1 + 135572 0.66 0.83125
Target:  5'- ---cCGGCGACCgaucggaaacgucgCCGGGGUCcgUCGGg -3'
miRNA:   3'- aggaGCCGCUGG--------------GGCUCCAGuaGGCU- -5'
11074 3' -60.1 NC_002794.1 + 31388 0.66 0.825682
Target:  5'- gUCgUCGGCGGCCCCGccG-CGcCCGc -3'
miRNA:   3'- -AGgAGCCGCUGGGGCucCaGUaGGCu -5'
11074 3' -60.1 NC_002794.1 + 112278 0.66 0.82488
Target:  5'- gUCCUCggccuccgugucgGGCGGCCCCccGG--GUCCGAc -3'
miRNA:   3'- -AGGAG-------------CCGCUGGGGcuCCagUAGGCU- -5'
11074 3' -60.1 NC_002794.1 + 113045 0.66 0.817593
Target:  5'- aUCCgucaGGCGcGCCUCGAGGUC--CCGc -3'
miRNA:   3'- -AGGag--CCGC-UGGGGCUCCAGuaGGCu -5'
11074 3' -60.1 NC_002794.1 + 83870 0.66 0.817593
Target:  5'- gUCCcggUCGGCGcgacgGCCCCGGGcUCGgcgcCCGAc -3'
miRNA:   3'- -AGG---AGCCGC-----UGGGGCUCcAGUa---GGCU- -5'
11074 3' -60.1 NC_002794.1 + 114723 0.66 0.817593
Target:  5'- gCggCGGCGGCUCCG-GGUUcgUCGAg -3'
miRNA:   3'- aGgaGCCGCUGGGGCuCCAGuaGGCU- -5'
11074 3' -60.1 NC_002794.1 + 16537 0.66 0.817593
Target:  5'- gUCCcCGGCGuCCCCGGcGUCG-CCa- -3'
miRNA:   3'- -AGGaGCCGCuGGGGCUcCAGUaGGcu -5'
11074 3' -60.1 NC_002794.1 + 82914 0.66 0.809353
Target:  5'- gCCUC-GCGGCCCCGccgccGUCGccgcUCCGAc -3'
miRNA:   3'- aGGAGcCGCUGGGGCuc---CAGU----AGGCU- -5'
11074 3' -60.1 NC_002794.1 + 137349 0.67 0.792451
Target:  5'- -gCUCGGCGuCgUCGGGGUCuucUUCGAg -3'
miRNA:   3'- agGAGCCGCuGgGGCUCCAGu--AGGCU- -5'
11074 3' -60.1 NC_002794.1 + 21394 0.67 0.787276
Target:  5'- uUCCUCGGacaccgccggcuccaCGAUCUCGAGcccGUCcUCCGAu -3'
miRNA:   3'- -AGGAGCC---------------GCUGGGGCUC---CAGuAGGCU- -5'
11074 3' -60.1 NC_002794.1 + 121602 0.67 0.775031
Target:  5'- -gUUCGGCGACgauUUCGAaGUCAUCCGGc -3'
miRNA:   3'- agGAGCCGCUG---GGGCUcCAGUAGGCU- -5'
11074 3' -60.1 NC_002794.1 + 37960 0.67 0.775031
Target:  5'- cUCgCUCGGCGGCUcgugguacgagCCGAucgcGGUCAgCCGGg -3'
miRNA:   3'- -AG-GAGCCGCUGG-----------GGCU----CCAGUaGGCU- -5'
11074 3' -60.1 NC_002794.1 + 2729 0.67 0.766146
Target:  5'- gUCUUUGGCGACCgagaCCG-GGUCccaugaccUCCGAg -3'
miRNA:   3'- -AGGAGCCGCUGG----GGCuCCAGu-------AGGCU- -5'
11074 3' -60.1 NC_002794.1 + 58055 0.67 0.766146
Target:  5'- cCCgUCGGCGGCCCCGGcGGcggCGggaCGGg -3'
miRNA:   3'- aGG-AGCCGCUGGGGCU-CCa--GUag-GCU- -5'
11074 3' -60.1 NC_002794.1 + 86846 0.67 0.757155
Target:  5'- --gUCGGCGGCCCCGccgggauuGGGUCugCCGc -3'
miRNA:   3'- aggAGCCGCUGGGGC--------UCCAGuaGGCu -5'
11074 3' -60.1 NC_002794.1 + 38670 0.67 0.757155
Target:  5'- cUCCcgCGcGCGACCCgcggaCGGGGUCA-CCGc -3'
miRNA:   3'- -AGGa-GC-CGCUGGG-----GCUCCAGUaGGCu -5'
11074 3' -60.1 NC_002794.1 + 177596 0.67 0.748064
Target:  5'- -gCUCGGCGgaGCCUCG-GGUCggUCGAu -3'
miRNA:   3'- agGAGCCGC--UGGGGCuCCAGuaGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.